Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1147

Experiment: BG11 with nitrate 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with nitrate 25 mM
1,170,584	-				+0.7
1,170,594	+				-1.3
1,170,604	+				+1.4
1,170,612	-				-2.9
1,170,618	+				+2.0
1,170,622	-				-1.0
1,170,623	+				+1.0
1,170,687	-				-0.9
1,170,802	-				+0.7
1,170,824	+				-0.7
1,170,824	+				+0.1
1,170,827	-				+2.0
1,170,832	-				-2.0
1,170,840	+				-0.7
1,170,840	+				-0.1
1,170,853	+				-0.3
1,170,868	-				+0.0
1,170,880	+		Synpcc7942_1145	0.11	+0.6
1,170,942	+		Synpcc7942_1145	0.30	+0.2
1,170,944	-		Synpcc7942_1145	0.31	-1.1
1,170,945	-		Synpcc7942_1145	0.31	-3.2
1,170,945	-		Synpcc7942_1145	0.31	-3.3
1,170,958	-		Synpcc7942_1145	0.35	+0.8
1,171,020	+		Synpcc7942_1145	0.54	+0.8
1,171,020	+		Synpcc7942_1145	0.54	-0.2
1,171,031	+		Synpcc7942_1145	0.57	-1.3
1,171,031	+		Synpcc7942_1145	0.57	+0.0
1,171,040	-		Synpcc7942_1145	0.60	+0.5
1,171,213	+				+0.1
1,171,213	+				+0.4
1,171,213	+				-0.2
1,171,213	+				-0.3
1,171,213	+				+1.0
1,171,221	-				+0.4
1,171,223	+				+0.2
1,171,247	+		Synpcc7942_1146	0.12	-1.1
1,171,247	+		Synpcc7942_1146	0.12	-0.8
1,171,248	+		Synpcc7942_1146	0.12	+1.0
1,171,255	-		Synpcc7942_1146	0.15	+5.3
1,171,255	-		Synpcc7942_1146	0.15	+0.0
1,171,296	+		Synpcc7942_1146	0.30	-0.7
1,171,304	-		Synpcc7942_1146	0.33	+0.5
1,171,335	-		Synpcc7942_1146	0.45	-1.4
1,171,380	-		Synpcc7942_1146	0.62	+0.1
1,171,381	-		Synpcc7942_1146	0.62	-0.7
1,171,381	-		Synpcc7942_1146	0.62	+1.0
1,171,413	+		Synpcc7942_1146	0.74	+0.0
1,171,413	+		Synpcc7942_1146	0.74	-1.0
1,171,449	+		Synpcc7942_1146	0.88	-0.2
1,171,457	+				-1.2
1,171,459	-				+0.4
1,171,519	+				-0.4
1,171,554	+				+0.2
1,171,554	+				+1.2
1,171,554	+				-0.4
1,171,568	+				-1.0
1,171,569	+				-0.2
1,171,569	-				-0.7
1,171,570	-				+0.0
1,171,576	-				-0.8
1,171,582	+				-0.7
1,171,591	+				+1.5
1,171,592	+				-1.7
1,171,600	-				-0.5
1,171,600	-				-0.4
1,171,631	+				-0.3
1,171,696	+		Synpcc7942_1147	0.18	+0.9
1,171,696	+		Synpcc7942_1147	0.18	+0.9
1,171,704	-		Synpcc7942_1147	0.19	+1.1
1,171,704	-		Synpcc7942_1147	0.19	-0.1
1,171,704	-		Synpcc7942_1147	0.19	-0.0
1,171,737	+		Synpcc7942_1147	0.23	-1.0
1,171,750	+		Synpcc7942_1147	0.25	+0.5
1,171,758	-		Synpcc7942_1147	0.26	+1.2
1,171,768	+		Synpcc7942_1147	0.28	-1.4
1,171,768	+		Synpcc7942_1147	0.28	-1.6
1,171,768	+		Synpcc7942_1147	0.28	-0.3
1,171,776	-		Synpcc7942_1147	0.29	-0.1
1,171,776	-		Synpcc7942_1147	0.29	-0.7
1,171,776	-		Synpcc7942_1147	0.29	+0.6
1,171,818	+		Synpcc7942_1147	0.35	+0.8
1,171,828	+		Synpcc7942_1147	0.36	+0.3
1,171,836	-		Synpcc7942_1147	0.37	-0.7
1,171,836	-		Synpcc7942_1147	0.37	-0.7
1,171,921	-		Synpcc7942_1147	0.49	-1.7
1,171,952	+		Synpcc7942_1147	0.54	-0.8
1,171,983	-		Synpcc7942_1147	0.58	+0.0
1,171,986	+		Synpcc7942_1147	0.59	+0.7
1,172,003	+		Synpcc7942_1147	0.61	+0.8
1,172,007	+		Synpcc7942_1147	0.62	+0.1
1,172,011	-		Synpcc7942_1147	0.62	+0.8
1,172,032	-		Synpcc7942_1147	0.65	-0.0
1,172,050	+		Synpcc7942_1147	0.68	-0.9
1,172,127	+		Synpcc7942_1147	0.79	+0.7
1,172,127	+		Synpcc7942_1147	0.79	-0.7
1,172,130	+		Synpcc7942_1147	0.79	+1.2
1,172,140	+		Synpcc7942_1147	0.80	+1.4
1,172,150	+		Synpcc7942_1147	0.82	-1.8
1,172,158	-		Synpcc7942_1147	0.83	-0.5
1,172,163	+		Synpcc7942_1147	0.84	+0.2
1,172,163	+		Synpcc7942_1147	0.84	+0.0
1,172,202	+		Synpcc7942_1147	0.89	-3.7
1,172,209	-				+0.2
1,172,210	-				+0.4
1,172,215	-				-0.6
1,172,215	-				-1.0
1,172,221	-				+0.9
1,172,254	+				+0.2
1,172,260	+				+0.8
1,172,263	-				-1.4
1,172,263	-				-0.5
1,172,263	-				+0.5
1,172,268	-				-0.3
1,172,268	-				+1.0
1,172,273	-				-2.7
1,172,281	-				+1.4
1,172,281	-				+0.8
1,172,282	-				-0.1
1,172,303	-				+0.6
1,172,303	-				+0.3
1,172,304	+				-0.6
1,172,304	+				+0.0
1,172,304	+				+0.3
1,172,312	-				-0.3
1,172,312	-				+0.8
1,172,314	+				+1.6
1,172,330	-				-1.4
1,172,339	-				-0.0
1,172,432	-				-0.6
1,172,457	+				+0.7
1,172,457	+				+1.2
1,172,465	-				+0.2
1,172,483	+				+0.6
1,172,483	+				-0.9
1,172,486	-				+0.2
1,172,488	+				+0.5
1,172,490	+				+0.2
1,172,491	-				-1.5
1,172,491	-				+0.6
1,172,551	+				-0.0
1,172,692	+				-0.3
1,172,772	+				+0.6
1,172,798	-				+0.7
1,172,804	-				+1.2
1,172,804	-				-0.2
1,172,804	-				-1.1
1,172,832	+		Synpcc7942_1148	0.11	-1.1
1,172,860	+		Synpcc7942_1148	0.14	-1.2
1,172,866	+		Synpcc7942_1148	0.14	+0.0
1,172,871	+		Synpcc7942_1148	0.14	-1.9
1,172,873	+		Synpcc7942_1148	0.15	+0.7
1,172,874	-		Synpcc7942_1148	0.15	-0.9
1,172,874	-		Synpcc7942_1148	0.15	+0.5
1,172,919	-		Synpcc7942_1148	0.18	+1.0
1,172,938	+		Synpcc7942_1148	0.20	+0.0
1,172,943	+		Synpcc7942_1148	0.20	+0.6
1,172,951	-		Synpcc7942_1148	0.21	-0.7
1,172,979	+		Synpcc7942_1148	0.23	-2.5
1,172,987	-		Synpcc7942_1148	0.24	-1.2
1,172,992	-		Synpcc7942_1148	0.24	-0.2
1,172,995	+		Synpcc7942_1148	0.25	-0.8
1,173,002	-		Synpcc7942_1148	0.25	+0.6
1,173,017	+		Synpcc7942_1148	0.26	-0.3
1,173,065	-		Synpcc7942_1148	0.30	+0.0
1,173,091	+		Synpcc7942_1148	0.33	-0.4
1,173,108	-		Synpcc7942_1148	0.34	-2.3
1,173,124	+		Synpcc7942_1148	0.35	-1.5
1,173,130	-		Synpcc7942_1148	0.36	+0.7
1,173,169	+		Synpcc7942_1148	0.39	+1.0
1,173,175	-		Synpcc7942_1148	0.39	-0.7
1,173,177	-		Synpcc7942_1148	0.40	-0.1
1,173,205	+		Synpcc7942_1148	0.42	+1.8
1,173,226	+		Synpcc7942_1148	0.44	-0.4
1,173,238	+		Synpcc7942_1148	0.45	+0.0
1,173,246	-		Synpcc7942_1148	0.45	-0.2
1,173,246	-		Synpcc7942_1148	0.45	-1.3
1,173,246	-		Synpcc7942_1148	0.45	+0.9
1,173,278	+		Synpcc7942_1148	0.48	+1.8