Experiment: BG11 with nitrate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0863 and Synpcc7942_0864 are separated by 186 nucleotides Synpcc7942_0864 and Synpcc7942_0865 are separated by 72 nucleotides Synpcc7942_0865 and Synpcc7942_0866 are separated by 62 nucleotides Synpcc7942_0866 and Synpcc7942_0867 are separated by 47 nucleotides
Synpcc7942_0863: Synpcc7942_0863 - hypothetical protein, at 866,027 to 867,208
_0863
Synpcc7942_0864: Synpcc7942_0864 - hypothetical protein, at 867,395 to 867,913
_0864
Synpcc7942_0865: Synpcc7942_0865 - nucleotide-binding protein, at 867,986 to 868,477
_0865
Synpcc7942_0866: Synpcc7942_0866 - hypothetical protein, at 868,540 to 869,121
_0866
Synpcc7942_0867: Synpcc7942_0867 - hypothetical protein, at 869,169 to 869,504
_0867
Position (kb) 867
868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 867.014 kb on - strand, within Synpcc7942_0863 at 867.088 kb on - strand, within Synpcc7942_0863 at 867.109 kb on + strand at 867.129 kb on + strand at 867.146 kb on + strand at 867.156 kb on + strand at 867.188 kb on - strand at 867.221 kb on - strand at 867.221 kb on - strand at 867.239 kb on - strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.301 kb on + strand at 867.304 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.311 kb on + strand at 867.311 kb on + strand at 867.314 kb on - strand at 867.314 kb on - strand at 867.319 kb on - strand at 867.329 kb on - strand at 867.329 kb on - strand at 867.332 kb on + strand at 867.332 kb on + strand at 867.332 kb on + strand at 867.339 kb on - strand at 867.347 kb on + strand at 867.347 kb on + strand at 867.347 kb on + strand at 867.403 kb on + strand at 867.415 kb on + strand at 867.421 kb on + strand at 867.429 kb on - strand at 867.481 kb on + strand, within Synpcc7942_0864 at 867.769 kb on + strand at 867.769 kb on + strand at 867.917 kb on + strand at 867.925 kb on - strand at 867.925 kb on - strand at 867.926 kb on + strand at 867.934 kb on - strand at 867.963 kb on - strand at 868.029 kb on + strand at 868.029 kb on + strand at 868.049 kb on + strand, within Synpcc7942_0865 at 868.068 kb on + strand, within Synpcc7942_0865 at 868.107 kb on + strand, within Synpcc7942_0865 at 868.209 kb on - strand, within Synpcc7942_0865 at 868.270 kb on + strand, within Synpcc7942_0865 at 868.275 kb on + strand, within Synpcc7942_0865 at 868.289 kb on + strand, within Synpcc7942_0865 at 868.290 kb on - strand, within Synpcc7942_0865 at 868.294 kb on + strand, within Synpcc7942_0865 at 868.297 kb on - strand, within Synpcc7942_0865 at 868.314 kb on - strand, within Synpcc7942_0865 at 868.325 kb on - strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.339 kb on + strand, within Synpcc7942_0865 at 868.347 kb on - strand, within Synpcc7942_0865 at 868.347 kb on - strand, within Synpcc7942_0865 at 868.347 kb on - strand, within Synpcc7942_0865 at 868.347 kb on - strand, within Synpcc7942_0865 at 868.381 kb on + strand, within Synpcc7942_0865 at 868.386 kb on + strand, within Synpcc7942_0865 at 868.386 kb on + strand, within Synpcc7942_0865 at 868.386 kb on + strand, within Synpcc7942_0865 at 868.393 kb on + strand, within Synpcc7942_0865 at 868.394 kb on - strand, within Synpcc7942_0865 at 868.394 kb on - strand, within Synpcc7942_0865 at 868.394 kb on - strand, within Synpcc7942_0865 at 868.394 kb on - strand, within Synpcc7942_0865 at 868.394 kb on - strand, within Synpcc7942_0865 at 868.398 kb on + strand at 868.401 kb on - strand, within Synpcc7942_0865 at 868.405 kb on - strand, within Synpcc7942_0865 at 868.433 kb on + strand at 868.451 kb on + strand at 868.492 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.509 kb on - strand at 868.509 kb on - strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.514 kb on - strand at 868.520 kb on - strand at 868.520 kb on - strand at 868.522 kb on + strand at 868.522 kb on + strand at 868.522 kb on + strand at 868.530 kb on - strand at 868.530 kb on - strand at 868.530 kb on - strand at 868.530 kb on - strand at 868.530 kb on - strand at 868.595 kb on - strand at 868.617 kb on - strand, within Synpcc7942_0866 at 868.617 kb on - strand, within Synpcc7942_0866 at 868.617 kb on - strand at 868.677 kb on - strand, within Synpcc7942_0866 at 868.677 kb on - strand, within Synpcc7942_0866 at 868.738 kb on + strand, within Synpcc7942_0866 at 868.744 kb on + strand, within Synpcc7942_0866 at 868.749 kb on - strand, within Synpcc7942_0866 at 868.754 kb on - strand, within Synpcc7942_0866 at 868.754 kb on - strand, within Synpcc7942_0866 at 868.773 kb on - strand, within Synpcc7942_0866 at 868.854 kb on + strand, within Synpcc7942_0866 at 868.874 kb on + strand, within Synpcc7942_0866 at 868.879 kb on + strand, within Synpcc7942_0866 at 868.884 kb on + strand, within Synpcc7942_0866 at 868.884 kb on + strand, within Synpcc7942_0866 at 868.892 kb on - strand, within Synpcc7942_0866 at 868.892 kb on - strand, within Synpcc7942_0866 at 868.927 kb on - strand, within Synpcc7942_0866 at 868.930 kb on + strand, within Synpcc7942_0866 at 868.930 kb on + strand, within Synpcc7942_0866 at 868.930 kb on + strand, within Synpcc7942_0866 at 868.930 kb on + strand, within Synpcc7942_0866 at 868.939 kb on - strand, within Synpcc7942_0866 at 868.958 kb on + strand, within Synpcc7942_0866 at 868.977 kb on + strand, within Synpcc7942_0866 at 868.985 kb on - strand, within Synpcc7942_0866 at 868.991 kb on - strand, within Synpcc7942_0866 at 868.993 kb on + strand, within Synpcc7942_0866 at 869.009 kb on + strand, within Synpcc7942_0866 at 869.012 kb on + strand, within Synpcc7942_0866 at 869.012 kb on + strand, within Synpcc7942_0866 at 869.017 kb on - strand, within Synpcc7942_0866 at 869.017 kb on - strand, within Synpcc7942_0866 at 869.017 kb on - strand, within Synpcc7942_0866 at 869.020 kb on - strand, within Synpcc7942_0866 at 869.027 kb on - strand, within Synpcc7942_0866 at 869.061 kb on - strand, within Synpcc7942_0866 at 869.090 kb on + strand at 869.134 kb on + strand at 869.142 kb on - strand at 869.166 kb on + strand at 869.178 kb on + strand at 869.187 kb on + strand at 869.189 kb on + strand at 869.195 kb on - strand at 869.201 kb on + strand at 869.204 kb on - strand, within Synpcc7942_0867 at 869.209 kb on - strand, within Synpcc7942_0867 at 869.220 kb on + strand, within Synpcc7942_0867 at 869.269 kb on + strand, within Synpcc7942_0867 at 869.295 kb on + strand, within Synpcc7942_0867 at 869.337 kb on - strand, within Synpcc7942_0867 at 869.373 kb on + strand, within Synpcc7942_0867 at 869.381 kb on - strand, within Synpcc7942_0867 at 869.394 kb on - strand, within Synpcc7942_0867 at 869.399 kb on - strand, within Synpcc7942_0867 at 869.418 kb on + strand, within Synpcc7942_0867 at 869.432 kb on - strand, within Synpcc7942_0867
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrate 25 mM remove 867,014 - Synpcc7942_0863 0.84 -1.4 867,088 - Synpcc7942_0863 0.90 -1.3 867,109 + -0.3 867,129 + -1.1 867,146 + -0.3 867,156 + -0.5 867,188 - -2.0 867,221 - +0.5 867,221 - +0.1 867,239 - +1.0 867,301 + -0.7 867,301 + +0.1 867,301 + -1.4 867,301 + -1.6 867,301 + -0.9 867,301 + +0.9 867,301 + -0.5 867,301 + -0.5 867,301 + -0.7 867,301 + -2.7 867,301 + -0.3 867,304 - -0.5 867,309 - +0.3 867,309 - -2.0 867,309 - +0.2 867,309 - -0.6 867,309 - +0.1 867,309 - +0.8 867,309 - -0.9 867,309 - -1.3 867,309 - -0.2 867,309 - -0.3 867,309 - -2.4 867,309 - +1.3 867,309 - -0.6 867,309 - -0.7 867,311 + +0.7 867,311 + -0.9 867,314 - +0.1 867,314 - -0.9 867,319 - -1.4 867,329 - -0.1 867,329 - -1.9 867,332 + +0.5 867,332 + -2.3 867,332 + -0.2 867,339 - -2.3 867,347 + +1.5 867,347 + -1.5 867,347 + -0.0 867,403 + -0.3 867,415 + +0.1 867,421 + -3.1 867,429 - -0.7 867,481 + Synpcc7942_0864 0.17 +0.1 867,769 + -0.7 867,769 + +0.5 867,917 + -0.8 867,925 - -0.1 867,925 - -1.0 867,926 + +0.4 867,934 - +0.6 867,963 - -1.5 868,029 + +0.5 868,029 + +1.7 868,049 + Synpcc7942_0865 0.13 +0.7 868,068 + Synpcc7942_0865 0.17 +0.2 868,107 + Synpcc7942_0865 0.25 +0.7 868,209 - Synpcc7942_0865 0.45 +2.3 868,270 + Synpcc7942_0865 0.58 -0.7 868,275 + Synpcc7942_0865 0.59 -0.8 868,289 + Synpcc7942_0865 0.62 -0.9 868,290 - Synpcc7942_0865 0.62 -0.0 868,294 + Synpcc7942_0865 0.63 +2.7 868,297 - Synpcc7942_0865 0.63 -0.4 868,314 - Synpcc7942_0865 0.67 -0.1 868,325 - Synpcc7942_0865 0.69 -1.9 868,339 + Synpcc7942_0865 0.72 -0.8 868,339 + Synpcc7942_0865 0.72 +1.8 868,339 + Synpcc7942_0865 0.72 +1.0 868,339 + Synpcc7942_0865 0.72 -1.3 868,339 + Synpcc7942_0865 0.72 +1.1 868,339 + Synpcc7942_0865 0.72 +0.1 868,347 - Synpcc7942_0865 0.73 +0.2 868,347 - Synpcc7942_0865 0.73 +2.5 868,347 - Synpcc7942_0865 0.73 +1.4 868,347 - Synpcc7942_0865 0.73 -1.4 868,381 + Synpcc7942_0865 0.80 +1.4 868,386 + Synpcc7942_0865 0.81 +0.5 868,386 + Synpcc7942_0865 0.81 +0.9 868,386 + Synpcc7942_0865 0.81 +1.0 868,393 + Synpcc7942_0865 0.83 -0.3 868,394 - Synpcc7942_0865 0.83 +3.3 868,394 - Synpcc7942_0865 0.83 +1.0 868,394 - Synpcc7942_0865 0.83 +1.5 868,394 - Synpcc7942_0865 0.83 +0.6 868,394 - Synpcc7942_0865 0.83 +1.4 868,398 + +0.1 868,401 - Synpcc7942_0865 0.84 +0.4 868,405 - Synpcc7942_0865 0.85 -1.3 868,433 + -0.8 868,451 + +0.8 868,492 + +0.1 868,501 + +0.4 868,501 + +0.7 868,501 + +0.2 868,501 + +0.1 868,501 + -0.5 868,501 + -0.3 868,501 + +0.2 868,509 - -1.2 868,509 - +0.7 868,512 + -1.6 868,512 + -1.3 868,514 - -0.4 868,520 - +0.1 868,520 - +1.8 868,522 + -1.0 868,522 + +1.9 868,522 + -0.7 868,530 - -1.2 868,530 - +0.1 868,530 - -0.0 868,530 - -1.6 868,530 - -0.7 868,595 - +2.7 868,617 - Synpcc7942_0866 0.13 -0.8 868,617 - Synpcc7942_0866 0.13 +0.5 868,617 - -0.3 868,677 - Synpcc7942_0866 0.24 +0.3 868,677 - Synpcc7942_0866 0.24 -1.5 868,738 + Synpcc7942_0866 0.34 -0.6 868,744 + Synpcc7942_0866 0.35 -1.2 868,749 - Synpcc7942_0866 0.36 -0.5 868,754 - Synpcc7942_0866 0.37 -0.8 868,754 - Synpcc7942_0866 0.37 -0.3 868,773 - Synpcc7942_0866 0.40 -0.5 868,854 + Synpcc7942_0866 0.54 +0.1 868,874 + Synpcc7942_0866 0.57 -0.8 868,879 + Synpcc7942_0866 0.58 -2.2 868,884 + Synpcc7942_0866 0.59 -1.6 868,884 + Synpcc7942_0866 0.59 -1.3 868,892 - Synpcc7942_0866 0.60 +1.1 868,892 - Synpcc7942_0866 0.60 -1.0 868,927 - Synpcc7942_0866 0.66 -0.5 868,930 + Synpcc7942_0866 0.67 -0.4 868,930 + Synpcc7942_0866 0.67 -2.2 868,930 + Synpcc7942_0866 0.67 +0.3 868,930 + Synpcc7942_0866 0.67 -0.3 868,939 - Synpcc7942_0866 0.69 +0.2 868,958 + Synpcc7942_0866 0.72 +0.1 868,977 + Synpcc7942_0866 0.75 +0.7 868,985 - Synpcc7942_0866 0.76 -0.7 868,991 - Synpcc7942_0866 0.77 +0.2 868,993 + Synpcc7942_0866 0.78 -0.3 869,009 + Synpcc7942_0866 0.81 -0.9 869,012 + Synpcc7942_0866 0.81 -0.5 869,012 + Synpcc7942_0866 0.81 -0.4 869,017 - Synpcc7942_0866 0.82 +0.3 869,017 - Synpcc7942_0866 0.82 -0.4 869,017 - Synpcc7942_0866 0.82 -0.7 869,020 - Synpcc7942_0866 0.82 -0.2 869,027 - Synpcc7942_0866 0.84 -1.7 869,061 - Synpcc7942_0866 0.90 -3.0 869,090 + +1.5 869,134 + -0.3 869,142 - +0.3 869,166 + -0.4 869,178 + -0.3 869,187 + -1.9 869,189 + +2.1 869,195 - -1.0 869,201 + -0.6 869,204 - Synpcc7942_0867 0.10 -0.3 869,209 - Synpcc7942_0867 0.12 +1.3 869,220 + Synpcc7942_0867 0.15 -0.4 869,269 + Synpcc7942_0867 0.30 -0.2 869,295 + Synpcc7942_0867 0.38 -0.4 869,337 - Synpcc7942_0867 0.50 +0.5 869,373 + Synpcc7942_0867 0.61 -0.2 869,381 - Synpcc7942_0867 0.63 +0.9 869,394 - Synpcc7942_0867 0.67 -2.4 869,399 - Synpcc7942_0867 0.68 -2.5 869,418 + Synpcc7942_0867 0.74 -1.5 869,432 - Synpcc7942_0867 0.78 -1.1
Or see this region's nucleotide sequence