Experiment: BG11 with nitrate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clpS and ylmG are separated by 31 nucleotides ylmG and lepB are separated by 30 nucleotides lepB and lepA overlap by 1 nucleotides lepA and Synpcc7942_0480 are separated by 151 nucleotides
Synpcc7942_0476: clpS - ATP-dependent Clp protease adaptor, at 460,552 to 460,962
clpS
Synpcc7942_0477: ylmG - conserved hypothetical protein YCF19, at 460,994 to 461,293
ylmG
Synpcc7942_0478: lepB - thylakoidal processing peptidase. Serine peptidase. MEROPS family S26A, at 461,324 to 461,935
lepB
Synpcc7942_0479: lepA - GTP-binding protein LepA, at 461,935 to 463,749
lepA
Synpcc7942_0480: Synpcc7942_0480 - GAF sensor signal transduction histidine kinase, at 463,901 to 465,634
_0480
Position (kb) 461
462
463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 460.961 kb on + strand at 460.964 kb on - strand at 461.046 kb on - strand, within ylmG at 461.046 kb on - strand, within ylmG at 461.059 kb on - strand, within ylmG at 461.110 kb on - strand, within ylmG at 461.165 kb on - strand, within ylmG at 461.288 kb on + strand at 461.296 kb on - strand at 461.298 kb on - strand at 461.335 kb on - strand at 461.338 kb on - strand at 461.362 kb on + strand at 461.363 kb on + strand at 461.363 kb on + strand at 461.371 kb on - strand at 461.371 kb on - strand at 461.372 kb on + strand at 461.378 kb on - strand at 461.380 kb on + strand at 461.902 kb on - strand at 461.931 kb on + strand at 461.951 kb on + strand at 461.951 kb on + strand at 461.963 kb on + strand at 461.963 kb on + strand at 461.973 kb on - strand at 461.983 kb on + strand at 461.988 kb on + strand at 462.097 kb on - strand at 462.155 kb on + strand, within lepA at 462.193 kb on + strand, within lepA at 462.203 kb on + strand, within lepA at 462.223 kb on - strand, within lepA at 462.271 kb on + strand, within lepA at 462.292 kb on - strand, within lepA at 462.334 kb on + strand, within lepA at 462.347 kb on - strand, within lepA at 462.347 kb on - strand, within lepA at 462.349 kb on - strand, within lepA at 462.363 kb on + strand, within lepA at 462.363 kb on + strand, within lepA at 462.371 kb on - strand, within lepA at 462.414 kb on - strand, within lepA at 462.527 kb on - strand, within lepA at 462.560 kb on - strand, within lepA at 462.560 kb on - strand, within lepA at 462.560 kb on - strand, within lepA at 462.576 kb on + strand, within lepA at 462.626 kb on + strand, within lepA at 462.667 kb on + strand, within lepA at 462.738 kb on - strand, within lepA at 462.788 kb on - strand, within lepA at 462.838 kb on - strand, within lepA at 462.842 kb on + strand, within lepA at 462.870 kb on - strand, within lepA at 462.893 kb on + strand, within lepA at 462.894 kb on + strand, within lepA at 462.928 kb on - strand, within lepA at 462.945 kb on - strand, within lepA at 463.036 kb on + strand, within lepA at 463.048 kb on + strand, within lepA at 463.096 kb on - strand, within lepA at 463.131 kb on - strand, within lepA at 463.211 kb on - strand, within lepA at 463.213 kb on + strand, within lepA at 463.265 kb on + strand, within lepA at 463.311 kb on + strand, within lepA at 463.322 kb on + strand, within lepA at 463.330 kb on - strand, within lepA at 463.368 kb on - strand, within lepA at 463.378 kb on + strand, within lepA at 463.388 kb on + strand, within lepA at 463.390 kb on - strand, within lepA at 463.399 kb on + strand, within lepA at 463.407 kb on + strand, within lepA at 463.407 kb on + strand, within lepA at 463.409 kb on + strand, within lepA at 463.415 kb on - strand, within lepA at 463.415 kb on - strand, within lepA at 463.415 kb on - strand, within lepA at 463.488 kb on - strand, within lepA at 463.541 kb on + strand, within lepA at 463.567 kb on + strand, within lepA at 463.570 kb on - strand at 463.644 kb on - strand at 463.677 kb on + strand at 463.685 kb on - strand at 463.753 kb on + strand at 463.787 kb on - strand at 463.807 kb on - strand at 463.809 kb on + strand at 463.809 kb on + strand at 463.817 kb on - strand at 463.817 kb on - strand at 463.817 kb on - strand at 463.817 kb on - strand at 463.821 kb on + strand at 463.824 kb on - strand at 463.827 kb on - strand at 463.828 kb on - strand at 463.882 kb on + strand at 463.882 kb on + strand at 463.889 kb on + strand at 463.890 kb on - strand at 463.890 kb on - strand at 463.901 kb on + strand at 463.901 kb on + strand at 463.903 kb on + strand at 463.903 kb on + strand at 463.911 kb on - strand at 463.936 kb on - strand at 463.946 kb on - strand at 463.948 kb on + strand at 463.948 kb on + strand at 463.956 kb on - strand at 463.956 kb on - strand at 463.960 kb on + strand at 463.966 kb on - strand at 463.970 kb on + strand at 463.970 kb on + strand at 463.986 kb on + strand at 463.991 kb on + strand at 463.991 kb on + strand at 463.993 kb on + strand at 464.026 kb on + strand at 464.034 kb on - strand at 464.049 kb on - strand at 464.060 kb on + strand at 464.060 kb on + strand at 464.060 kb on + strand at 464.060 kb on + strand at 464.068 kb on - strand at 464.068 kb on - strand at 464.068 kb on - strand at 464.068 kb on - strand at 464.068 kb on - strand at 464.086 kb on + strand, within Synpcc7942_0480 at 464.126 kb on - strand, within Synpcc7942_0480 at 464.130 kb on + strand, within Synpcc7942_0480 at 464.133 kb on - strand, within Synpcc7942_0480 at 464.153 kb on + strand, within Synpcc7942_0480 at 464.161 kb on + strand, within Synpcc7942_0480 at 464.166 kb on + strand, within Synpcc7942_0480 at 464.206 kb on + strand, within Synpcc7942_0480 at 464.206 kb on + strand, within Synpcc7942_0480 at 464.206 kb on + strand, within Synpcc7942_0480 at 464.206 kb on + strand, within Synpcc7942_0480 at 464.214 kb on - strand, within Synpcc7942_0480 at 464.214 kb on - strand, within Synpcc7942_0480 at 464.222 kb on - strand, within Synpcc7942_0480 at 464.232 kb on + strand, within Synpcc7942_0480 at 464.240 kb on - strand, within Synpcc7942_0480 at 464.270 kb on - strand, within Synpcc7942_0480 at 464.270 kb on - strand, within Synpcc7942_0480 at 464.299 kb on + strand, within Synpcc7942_0480 at 464.313 kb on - strand, within Synpcc7942_0480 at 464.346 kb on + strand, within Synpcc7942_0480 at 464.348 kb on + strand, within Synpcc7942_0480 at 464.377 kb on - strand, within Synpcc7942_0480 at 464.420 kb on + strand, within Synpcc7942_0480 at 464.420 kb on + strand, within Synpcc7942_0480 at 464.420 kb on + strand, within Synpcc7942_0480 at 464.420 kb on + strand, within Synpcc7942_0480 at 464.420 kb on + strand, within Synpcc7942_0480 at 464.427 kb on + strand, within Synpcc7942_0480 at 464.427 kb on + strand, within Synpcc7942_0480 at 464.427 kb on + strand, within Synpcc7942_0480 at 464.427 kb on + strand, within Synpcc7942_0480 at 464.428 kb on - strand, within Synpcc7942_0480 at 464.428 kb on - strand, within Synpcc7942_0480 at 464.428 kb on - strand, within Synpcc7942_0480 at 464.428 kb on - strand, within Synpcc7942_0480 at 464.435 kb on - strand, within Synpcc7942_0480 at 464.435 kb on - strand at 464.435 kb on - strand, within Synpcc7942_0480 at 464.435 kb on - strand, within Synpcc7942_0480 at 464.439 kb on + strand, within Synpcc7942_0480 at 464.447 kb on - strand, within Synpcc7942_0480 at 464.447 kb on - strand, within Synpcc7942_0480 at 464.460 kb on - strand, within Synpcc7942_0480 at 464.461 kb on + strand, within Synpcc7942_0480 at 464.466 kb on + strand, within Synpcc7942_0480 at 464.489 kb on - strand, within Synpcc7942_0480 at 464.509 kb on + strand, within Synpcc7942_0480 at 464.509 kb on + strand, within Synpcc7942_0480 at 464.534 kb on + strand, within Synpcc7942_0480 at 464.543 kb on - strand at 464.590 kb on - strand at 464.612 kb on + strand, within Synpcc7942_0480 at 464.627 kb on - strand, within Synpcc7942_0480 at 464.653 kb on + strand, within Synpcc7942_0480 at 464.667 kb on + strand, within Synpcc7942_0480 at 464.685 kb on + strand, within Synpcc7942_0480 at 464.718 kb on - strand, within Synpcc7942_0480 at 464.718 kb on - strand, within Synpcc7942_0480 at 464.745 kb on - strand, within Synpcc7942_0480
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrate 25 mM remove 460,961 + +2.1 460,964 - +5.9 461,046 - ylmG Synpcc7942_0477 0.17 -1.9 461,046 - ylmG Synpcc7942_0477 0.17 -0.5 461,059 - ylmG Synpcc7942_0477 0.22 -1.0 461,110 - ylmG Synpcc7942_0477 0.39 -1.5 461,165 - ylmG Synpcc7942_0477 0.57 +2.1 461,288 + -1.4 461,296 - +0.5 461,298 - -1.5 461,335 - +0.1 461,338 - -1.6 461,362 + -1.0 461,363 + +1.7 461,363 + +1.4 461,371 - +1.0 461,371 - +0.5 461,372 + +0.4 461,378 - -2.6 461,380 + -1.8 461,902 - -1.0 461,931 + -1.0 461,951 + +0.8 461,951 + +1.6 461,963 + +1.5 461,963 + -1.0 461,973 - +1.6 461,983 + +2.2 461,988 + +0.1 462,097 - +1.5 462,155 + lepA Synpcc7942_0479 0.12 +1.9 462,193 + lepA Synpcc7942_0479 0.14 +0.2 462,203 + lepA Synpcc7942_0479 0.15 -0.2 462,223 - lepA Synpcc7942_0479 0.16 +0.7 462,271 + lepA Synpcc7942_0479 0.19 +1.8 462,292 - lepA Synpcc7942_0479 0.20 +2.1 462,334 + lepA Synpcc7942_0479 0.22 +1.9 462,347 - lepA Synpcc7942_0479 0.23 +0.3 462,347 - lepA Synpcc7942_0479 0.23 +1.7 462,349 - lepA Synpcc7942_0479 0.23 +3.0 462,363 + lepA Synpcc7942_0479 0.24 +1.3 462,363 + lepA Synpcc7942_0479 0.24 +1.4 462,371 - lepA Synpcc7942_0479 0.24 +0.8 462,414 - lepA Synpcc7942_0479 0.26 +0.7 462,527 - lepA Synpcc7942_0479 0.33 +0.6 462,560 - lepA Synpcc7942_0479 0.34 +1.0 462,560 - lepA Synpcc7942_0479 0.34 +1.2 462,560 - lepA Synpcc7942_0479 0.34 +1.8 462,576 + lepA Synpcc7942_0479 0.35 +1.6 462,626 + lepA Synpcc7942_0479 0.38 +0.3 462,667 + lepA Synpcc7942_0479 0.40 +1.9 462,738 - lepA Synpcc7942_0479 0.44 +1.1 462,788 - lepA Synpcc7942_0479 0.47 +1.3 462,838 - lepA Synpcc7942_0479 0.50 +2.8 462,842 + lepA Synpcc7942_0479 0.50 +0.8 462,870 - lepA Synpcc7942_0479 0.52 +1.1 462,893 + lepA Synpcc7942_0479 0.53 +2.1 462,894 + lepA Synpcc7942_0479 0.53 +0.8 462,928 - lepA Synpcc7942_0479 0.55 +0.9 462,945 - lepA Synpcc7942_0479 0.56 +0.8 463,036 + lepA Synpcc7942_0479 0.61 +0.9 463,048 + lepA Synpcc7942_0479 0.61 +1.3 463,096 - lepA Synpcc7942_0479 0.64 +1.1 463,131 - lepA Synpcc7942_0479 0.66 +1.0 463,211 - lepA Synpcc7942_0479 0.70 +0.3 463,213 + lepA Synpcc7942_0479 0.70 -0.3 463,265 + lepA Synpcc7942_0479 0.73 +1.8 463,311 + lepA Synpcc7942_0479 0.76 +1.3 463,322 + lepA Synpcc7942_0479 0.76 +0.9 463,330 - lepA Synpcc7942_0479 0.77 -1.7 463,368 - lepA Synpcc7942_0479 0.79 +1.0 463,378 + lepA Synpcc7942_0479 0.80 +1.9 463,388 + lepA Synpcc7942_0479 0.80 +0.5 463,390 - lepA Synpcc7942_0479 0.80 +1.1 463,399 + lepA Synpcc7942_0479 0.81 +2.0 463,407 + lepA Synpcc7942_0479 0.81 +1.7 463,407 + lepA Synpcc7942_0479 0.81 +1.7 463,409 + lepA Synpcc7942_0479 0.81 +0.5 463,415 - lepA Synpcc7942_0479 0.82 +1.4 463,415 - lepA Synpcc7942_0479 0.82 +0.8 463,415 - lepA Synpcc7942_0479 0.82 +1.3 463,488 - lepA Synpcc7942_0479 0.86 -0.2 463,541 + lepA Synpcc7942_0479 0.88 +1.2 463,567 + lepA Synpcc7942_0479 0.90 +1.6 463,570 - +2.0 463,644 - +1.5 463,677 + -0.3 463,685 - -0.9 463,753 + -2.1 463,787 - +1.8 463,807 - -2.1 463,809 + -0.9 463,809 + -2.3 463,817 - -2.5 463,817 - -0.1 463,817 - +0.2 463,817 - +0.5 463,821 + -2.4 463,824 - +0.3 463,827 - -1.5 463,828 - -0.1 463,882 + -1.6 463,882 + -2.6 463,889 + -0.5 463,890 - -1.7 463,890 - -1.9 463,901 + -1.3 463,901 + +0.2 463,903 + +0.2 463,903 + +0.2 463,911 - +0.2 463,936 - +0.7 463,946 - -1.5 463,948 + +0.2 463,948 + +0.4 463,956 - +0.7 463,956 - +0.3 463,960 + -0.6 463,966 - -0.5 463,970 + +0.0 463,970 + -1.0 463,986 + -0.2 463,991 + +0.4 463,991 + -1.2 463,993 + -0.7 464,026 + -0.1 464,034 - -0.1 464,049 - -0.8 464,060 + +1.1 464,060 + +0.1 464,060 + -0.3 464,060 + +0.5 464,068 - +0.5 464,068 - -0.6 464,068 - -1.8 464,068 - +0.2 464,068 - +1.1 464,086 + Synpcc7942_0480 0.11 -0.4 464,126 - Synpcc7942_0480 0.13 -0.4 464,130 + Synpcc7942_0480 0.13 +0.5 464,133 - Synpcc7942_0480 0.13 -0.5 464,153 + Synpcc7942_0480 0.15 +0.5 464,161 + Synpcc7942_0480 0.15 -2.2 464,166 + Synpcc7942_0480 0.15 -1.1 464,206 + Synpcc7942_0480 0.18 +0.5 464,206 + Synpcc7942_0480 0.18 +1.0 464,206 + Synpcc7942_0480 0.18 -0.4 464,206 + Synpcc7942_0480 0.18 -0.5 464,214 - Synpcc7942_0480 0.18 -0.2 464,214 - Synpcc7942_0480 0.18 -1.8 464,222 - Synpcc7942_0480 0.19 +0.7 464,232 + Synpcc7942_0480 0.19 -1.1 464,240 - Synpcc7942_0480 0.20 +2.9 464,270 - Synpcc7942_0480 0.21 +1.4 464,270 - Synpcc7942_0480 0.21 -3.3 464,299 + Synpcc7942_0480 0.23 -1.3 464,313 - Synpcc7942_0480 0.24 +0.5 464,346 + Synpcc7942_0480 0.26 +0.2 464,348 + Synpcc7942_0480 0.26 -1.1 464,377 - Synpcc7942_0480 0.27 -1.3 464,420 + Synpcc7942_0480 0.30 -0.1 464,420 + Synpcc7942_0480 0.30 -0.7 464,420 + Synpcc7942_0480 0.30 -0.1 464,420 + Synpcc7942_0480 0.30 +1.1 464,420 + Synpcc7942_0480 0.30 +1.5 464,427 + Synpcc7942_0480 0.30 +0.4 464,427 + Synpcc7942_0480 0.30 +0.9 464,427 + Synpcc7942_0480 0.30 +0.2 464,427 + Synpcc7942_0480 0.30 -1.1 464,428 - Synpcc7942_0480 0.30 -1.4 464,428 - Synpcc7942_0480 0.30 -0.2 464,428 - Synpcc7942_0480 0.30 +0.1 464,428 - Synpcc7942_0480 0.30 -0.4 464,435 - Synpcc7942_0480 0.31 -1.6 464,435 - +0.1 464,435 - Synpcc7942_0480 0.31 -0.6 464,435 - Synpcc7942_0480 0.31 +0.2 464,439 + Synpcc7942_0480 0.31 +0.2 464,447 - Synpcc7942_0480 0.31 -0.9 464,447 - Synpcc7942_0480 0.31 +0.2 464,460 - Synpcc7942_0480 0.32 -1.0 464,461 + Synpcc7942_0480 0.32 -0.6 464,466 + Synpcc7942_0480 0.33 +0.9 464,489 - Synpcc7942_0480 0.34 +0.3 464,509 + Synpcc7942_0480 0.35 -1.0 464,509 + Synpcc7942_0480 0.35 -0.9 464,534 + Synpcc7942_0480 0.37 -1.2 464,543 - +1.1 464,590 - +1.1 464,612 + Synpcc7942_0480 0.41 -0.8 464,627 - Synpcc7942_0480 0.42 -1.0 464,653 + Synpcc7942_0480 0.43 -0.5 464,667 + Synpcc7942_0480 0.44 -0.5 464,685 + Synpcc7942_0480 0.45 -0.7 464,718 - Synpcc7942_0480 0.47 -0.9 464,718 - Synpcc7942_0480 0.47 -1.2 464,745 - Synpcc7942_0480 0.49 -0.3
Or see this region's nucleotide sequence