Experiment: BG11 with nitrate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ltnT and Synpcc7942_0367 are separated by 34 nucleotides Synpcc7942_0367 and xseA are separated by 20 nucleotides
Synpcc7942_0366: ltnT - putative sulfate transporter, at 357,549 to 359,732
ltnT
Synpcc7942_0367: Synpcc7942_0367 - Na+-dependent transporter-like, at 359,767 to 360,690
_0367
Synpcc7942_0368: xseA - exodeoxyribonuclease VII large subunit, at 360,711 to 362,063
xseA
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 358.947 kb on + strand, within ltnT at 358.947 kb on + strand, within ltnT at 358.953 kb on - strand, within ltnT at 358.960 kb on - strand, within ltnT at 359.061 kb on + strand, within ltnT at 359.069 kb on - strand, within ltnT at 359.250 kb on + strand, within ltnT at 359.287 kb on + strand, within ltnT at 359.295 kb on - strand, within ltnT at 359.304 kb on + strand, within ltnT at 359.321 kb on + strand, within ltnT at 359.356 kb on + strand, within ltnT at 359.375 kb on - strand, within ltnT at 359.418 kb on - strand, within ltnT at 359.476 kb on + strand, within ltnT at 359.483 kb on + strand, within ltnT at 359.483 kb on + strand, within ltnT at 359.483 kb on + strand, within ltnT at 359.483 kb on + strand, within ltnT at 359.483 kb on + strand, within ltnT at 359.483 kb on + strand, within ltnT at 359.494 kb on + strand, within ltnT at 359.496 kb on + strand, within ltnT at 359.502 kb on - strand, within ltnT at 359.555 kb on + strand at 359.555 kb on + strand at 359.563 kb on - strand at 359.563 kb on - strand at 359.584 kb on + strand at 359.584 kb on + strand at 359.589 kb on - strand at 359.590 kb on - strand at 359.595 kb on + strand at 359.603 kb on - strand at 359.603 kb on - strand at 359.638 kb on - strand at 359.659 kb on + strand at 359.667 kb on + strand at 359.668 kb on - strand at 359.675 kb on + strand at 359.683 kb on - strand at 359.698 kb on + strand at 359.722 kb on - strand at 359.727 kb on + strand at 359.741 kb on - strand at 359.781 kb on + strand at 359.809 kb on + strand at 359.817 kb on - strand at 359.823 kb on + strand at 359.828 kb on + strand at 359.875 kb on - strand, within Synpcc7942_0367 at 359.884 kb on + strand, within Synpcc7942_0367 at 359.884 kb on + strand, within Synpcc7942_0367 at 359.887 kb on + strand, within Synpcc7942_0367 at 359.892 kb on - strand, within Synpcc7942_0367 at 359.920 kb on + strand, within Synpcc7942_0367 at 359.920 kb on + strand, within Synpcc7942_0367 at 359.920 kb on + strand, within Synpcc7942_0367 at 359.920 kb on + strand, within Synpcc7942_0367 at 359.928 kb on + strand, within Synpcc7942_0367 at 359.928 kb on - strand, within Synpcc7942_0367 at 359.928 kb on - strand, within Synpcc7942_0367 at 359.934 kb on - strand, within Synpcc7942_0367 at 359.953 kb on + strand, within Synpcc7942_0367 at 359.961 kb on - strand, within Synpcc7942_0367 at 359.987 kb on - strand, within Synpcc7942_0367 at 359.987 kb on - strand, within Synpcc7942_0367 at 360.004 kb on + strand, within Synpcc7942_0367 at 360.004 kb on + strand, within Synpcc7942_0367 at 360.018 kb on - strand, within Synpcc7942_0367 at 360.018 kb on - strand, within Synpcc7942_0367 at 360.018 kb on - strand, within Synpcc7942_0367 at 360.018 kb on - strand, within Synpcc7942_0367 at 360.027 kb on - strand, within Synpcc7942_0367 at 360.028 kb on + strand, within Synpcc7942_0367 at 360.033 kb on + strand, within Synpcc7942_0367 at 360.036 kb on - strand, within Synpcc7942_0367 at 360.036 kb on - strand, within Synpcc7942_0367 at 360.036 kb on - strand, within Synpcc7942_0367 at 360.195 kb on + strand, within Synpcc7942_0367 at 360.203 kb on - strand, within Synpcc7942_0367 at 360.203 kb on - strand, within Synpcc7942_0367 at 360.265 kb on - strand, within Synpcc7942_0367 at 360.281 kb on - strand, within Synpcc7942_0367 at 360.319 kb on + strand, within Synpcc7942_0367 at 360.327 kb on - strand, within Synpcc7942_0367 at 360.340 kb on - strand, within Synpcc7942_0367 at 360.387 kb on + strand, within Synpcc7942_0367 at 360.395 kb on - strand, within Synpcc7942_0367 at 360.422 kb on + strand, within Synpcc7942_0367 at 360.432 kb on + strand, within Synpcc7942_0367 at 360.432 kb on + strand, within Synpcc7942_0367 at 360.440 kb on - strand, within Synpcc7942_0367 at 360.451 kb on - strand, within Synpcc7942_0367 at 360.486 kb on + strand, within Synpcc7942_0367 at 360.486 kb on + strand, within Synpcc7942_0367 at 360.494 kb on - strand, within Synpcc7942_0367 at 360.531 kb on - strand, within Synpcc7942_0367 at 360.580 kb on - strand, within Synpcc7942_0367 at 360.580 kb on - strand, within Synpcc7942_0367 at 360.592 kb on - strand, within Synpcc7942_0367 at 360.592 kb on - strand, within Synpcc7942_0367 at 360.677 kb on + strand at 360.717 kb on - strand at 360.717 kb on - strand at 360.717 kb on - strand at 360.810 kb on + strand at 360.818 kb on - strand at 360.820 kb on + strand at 360.826 kb on + strand at 360.895 kb on + strand, within xseA at 360.943 kb on + strand, within xseA at 360.951 kb on - strand, within xseA at 360.958 kb on + strand, within xseA at 360.968 kb on + strand, within xseA at 360.976 kb on - strand, within xseA at 361.002 kb on + strand, within xseA at 361.002 kb on + strand, within xseA at 361.010 kb on - strand, within xseA at 361.010 kb on - strand, within xseA at 361.010 kb on - strand, within xseA at 361.010 kb on - strand, within xseA at 361.030 kb on - strand, within xseA at 361.042 kb on - strand, within xseA at 361.049 kb on - strand, within xseA at 361.069 kb on + strand, within xseA at 361.070 kb on + strand, within xseA at 361.089 kb on + strand, within xseA at 361.089 kb on + strand, within xseA at 361.121 kb on + strand, within xseA at 361.126 kb on + strand, within xseA at 361.129 kb on - strand, within xseA at 361.131 kb on + strand, within xseA at 361.134 kb on - strand, within xseA at 361.157 kb on + strand, within xseA at 361.157 kb on + strand, within xseA at 361.157 kb on + strand, within xseA at 361.164 kb on + strand, within xseA at 361.165 kb on - strand, within xseA at 361.165 kb on - strand, within xseA at 361.165 kb on - strand, within xseA at 361.175 kb on - strand, within xseA at 361.192 kb on + strand, within xseA at 361.199 kb on + strand, within xseA at 361.199 kb on + strand, within xseA at 361.307 kb on - strand, within xseA at 361.310 kb on - strand, within xseA at 361.331 kb on + strand, within xseA at 361.337 kb on + strand, within xseA at 361.338 kb on - strand, within xseA at 361.346 kb on - strand, within xseA at 361.354 kb on + strand, within xseA at 361.362 kb on - strand, within xseA at 361.366 kb on - strand, within xseA at 361.393 kb on - strand, within xseA at 361.406 kb on + strand, within xseA at 361.414 kb on - strand, within xseA at 361.414 kb on - strand, within xseA at 361.433 kb on + strand, within xseA at 361.467 kb on + strand, within xseA at 361.467 kb on + strand, within xseA at 361.475 kb on - strand, within xseA at 361.475 kb on - strand, within xseA at 361.475 kb on - strand, within xseA at 361.485 kb on - strand, within xseA at 361.485 kb on - strand, within xseA at 361.486 kb on - strand, within xseA at 361.496 kb on - strand, within xseA at 361.499 kb on - strand, within xseA at 361.506 kb on + strand, within xseA at 361.514 kb on - strand, within xseA at 361.536 kb on + strand, within xseA at 361.544 kb on - strand, within xseA at 361.553 kb on + strand, within xseA at 361.553 kb on + strand, within xseA at 361.561 kb on - strand, within xseA at 361.587 kb on - strand, within xseA at 361.633 kb on + strand, within xseA at 361.638 kb on + strand, within xseA at 361.638 kb on + strand, within xseA at 361.641 kb on - strand, within xseA at 361.654 kb on + strand, within xseA at 361.662 kb on - strand, within xseA
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrate 25 mM remove 358,947 + ltnT Synpcc7942_0366 0.64 +0.8 358,947 + ltnT Synpcc7942_0366 0.64 -0.3 358,953 - ltnT Synpcc7942_0366 0.64 +0.2 358,960 - ltnT Synpcc7942_0366 0.65 -0.2 359,061 + ltnT Synpcc7942_0366 0.69 -1.1 359,069 - ltnT Synpcc7942_0366 0.70 +0.7 359,250 + ltnT Synpcc7942_0366 0.78 -1.5 359,287 + ltnT Synpcc7942_0366 0.80 -0.1 359,295 - ltnT Synpcc7942_0366 0.80 +0.1 359,304 + ltnT Synpcc7942_0366 0.80 +0.3 359,321 + ltnT Synpcc7942_0366 0.81 +0.1 359,356 + ltnT Synpcc7942_0366 0.83 +2.3 359,375 - ltnT Synpcc7942_0366 0.84 +0.9 359,418 - ltnT Synpcc7942_0366 0.86 -1.4 359,476 + ltnT Synpcc7942_0366 0.88 +1.5 359,483 + ltnT Synpcc7942_0366 0.89 -1.8 359,483 + ltnT Synpcc7942_0366 0.89 -0.3 359,483 + ltnT Synpcc7942_0366 0.89 -1.8 359,483 + ltnT Synpcc7942_0366 0.89 +0.6 359,483 + ltnT Synpcc7942_0366 0.89 +0.4 359,483 + ltnT Synpcc7942_0366 0.89 -0.2 359,494 + ltnT Synpcc7942_0366 0.89 -0.1 359,496 + ltnT Synpcc7942_0366 0.89 -1.0 359,502 - ltnT Synpcc7942_0366 0.89 +0.8 359,555 + -0.8 359,555 + -1.0 359,563 - +0.3 359,563 - +1.1 359,584 + -0.4 359,584 + +0.1 359,589 - +0.8 359,590 - +0.2 359,595 + -1.3 359,603 - -0.4 359,603 - +0.9 359,638 - -0.1 359,659 + -0.4 359,667 + -1.4 359,668 - +0.6 359,675 + +1.1 359,683 - -0.1 359,698 + +1.5 359,722 - -0.2 359,727 + -1.5 359,741 - -0.2 359,781 + -0.2 359,809 + +1.7 359,817 - +0.6 359,823 + +0.9 359,828 + +0.3 359,875 - Synpcc7942_0367 0.12 -0.0 359,884 + Synpcc7942_0367 0.13 -0.8 359,884 + Synpcc7942_0367 0.13 -1.5 359,887 + Synpcc7942_0367 0.13 +1.8 359,892 - Synpcc7942_0367 0.14 +1.1 359,920 + Synpcc7942_0367 0.17 +0.4 359,920 + Synpcc7942_0367 0.17 -1.9 359,920 + Synpcc7942_0367 0.17 -0.7 359,920 + Synpcc7942_0367 0.17 +0.0 359,928 + Synpcc7942_0367 0.17 +0.7 359,928 - Synpcc7942_0367 0.17 -1.2 359,928 - Synpcc7942_0367 0.17 +1.1 359,934 - Synpcc7942_0367 0.18 -0.9 359,953 + Synpcc7942_0367 0.20 -1.4 359,961 - Synpcc7942_0367 0.21 -0.7 359,987 - Synpcc7942_0367 0.24 +0.9 359,987 - Synpcc7942_0367 0.24 +0.8 360,004 + Synpcc7942_0367 0.26 -1.3 360,004 + Synpcc7942_0367 0.26 +1.3 360,018 - Synpcc7942_0367 0.27 +0.9 360,018 - Synpcc7942_0367 0.27 -1.1 360,018 - Synpcc7942_0367 0.27 -0.0 360,018 - Synpcc7942_0367 0.27 +0.4 360,027 - Synpcc7942_0367 0.28 -2.1 360,028 + Synpcc7942_0367 0.28 +0.9 360,033 + Synpcc7942_0367 0.29 +0.8 360,036 - Synpcc7942_0367 0.29 +0.1 360,036 - Synpcc7942_0367 0.29 +0.3 360,036 - Synpcc7942_0367 0.29 -1.1 360,195 + Synpcc7942_0367 0.46 -1.4 360,203 - Synpcc7942_0367 0.47 -0.5 360,203 - Synpcc7942_0367 0.47 +0.1 360,265 - Synpcc7942_0367 0.54 +0.1 360,281 - Synpcc7942_0367 0.56 -0.1 360,319 + Synpcc7942_0367 0.60 +0.9 360,327 - Synpcc7942_0367 0.61 +0.8 360,340 - Synpcc7942_0367 0.62 +1.5 360,387 + Synpcc7942_0367 0.67 -0.2 360,395 - Synpcc7942_0367 0.68 +0.5 360,422 + Synpcc7942_0367 0.71 +0.6 360,432 + Synpcc7942_0367 0.72 -1.1 360,432 + Synpcc7942_0367 0.72 +1.5 360,440 - Synpcc7942_0367 0.73 -0.1 360,451 - Synpcc7942_0367 0.74 +0.9 360,486 + Synpcc7942_0367 0.78 +2.1 360,486 + Synpcc7942_0367 0.78 +0.4 360,494 - Synpcc7942_0367 0.79 +0.5 360,531 - Synpcc7942_0367 0.83 -0.9 360,580 - Synpcc7942_0367 0.88 +1.3 360,580 - Synpcc7942_0367 0.88 -0.9 360,592 - Synpcc7942_0367 0.89 -1.5 360,592 - Synpcc7942_0367 0.89 +0.0 360,677 + -0.1 360,717 - -0.2 360,717 - +1.5 360,717 - -1.2 360,810 + -0.1 360,818 - -0.7 360,820 + +0.2 360,826 + +0.7 360,895 + xseA Synpcc7942_0368 0.14 -1.6 360,943 + xseA Synpcc7942_0368 0.17 +0.3 360,951 - xseA Synpcc7942_0368 0.18 -0.8 360,958 + xseA Synpcc7942_0368 0.18 -0.1 360,968 + xseA Synpcc7942_0368 0.19 +0.7 360,976 - xseA Synpcc7942_0368 0.20 -0.4 361,002 + xseA Synpcc7942_0368 0.22 +0.5 361,002 + xseA Synpcc7942_0368 0.22 +0.1 361,010 - xseA Synpcc7942_0368 0.22 +0.5 361,010 - xseA Synpcc7942_0368 0.22 +1.5 361,010 - xseA Synpcc7942_0368 0.22 -0.0 361,010 - xseA Synpcc7942_0368 0.22 -0.5 361,030 - xseA Synpcc7942_0368 0.24 +0.6 361,042 - xseA Synpcc7942_0368 0.24 -0.3 361,049 - xseA Synpcc7942_0368 0.25 +1.8 361,069 + xseA Synpcc7942_0368 0.26 +0.4 361,070 + xseA Synpcc7942_0368 0.27 -0.0 361,089 + xseA Synpcc7942_0368 0.28 -0.5 361,089 + xseA Synpcc7942_0368 0.28 -0.9 361,121 + xseA Synpcc7942_0368 0.30 -1.4 361,126 + xseA Synpcc7942_0368 0.31 +0.2 361,129 - xseA Synpcc7942_0368 0.31 +1.2 361,131 + xseA Synpcc7942_0368 0.31 +0.3 361,134 - xseA Synpcc7942_0368 0.31 -0.8 361,157 + xseA Synpcc7942_0368 0.33 +0.1 361,157 + xseA Synpcc7942_0368 0.33 +0.4 361,157 + xseA Synpcc7942_0368 0.33 -0.0 361,164 + xseA Synpcc7942_0368 0.33 -1.1 361,165 - xseA Synpcc7942_0368 0.34 +2.1 361,165 - xseA Synpcc7942_0368 0.34 -1.9 361,165 - xseA Synpcc7942_0368 0.34 -0.1 361,175 - xseA Synpcc7942_0368 0.34 -1.2 361,192 + xseA Synpcc7942_0368 0.36 +0.8 361,199 + xseA Synpcc7942_0368 0.36 +0.5 361,199 + xseA Synpcc7942_0368 0.36 +0.2 361,307 - xseA Synpcc7942_0368 0.44 -2.4 361,310 - xseA Synpcc7942_0368 0.44 -0.8 361,331 + xseA Synpcc7942_0368 0.46 -1.7 361,337 + xseA Synpcc7942_0368 0.46 -1.8 361,338 - xseA Synpcc7942_0368 0.46 -0.1 361,346 - xseA Synpcc7942_0368 0.47 -0.1 361,354 + xseA Synpcc7942_0368 0.48 -2.0 361,362 - xseA Synpcc7942_0368 0.48 -0.7 361,366 - xseA Synpcc7942_0368 0.48 -0.1 361,393 - xseA Synpcc7942_0368 0.50 -1.3 361,406 + xseA Synpcc7942_0368 0.51 -0.0 361,414 - xseA Synpcc7942_0368 0.52 +0.0 361,414 - xseA Synpcc7942_0368 0.52 -0.7 361,433 + xseA Synpcc7942_0368 0.53 -0.5 361,467 + xseA Synpcc7942_0368 0.56 -0.9 361,467 + xseA Synpcc7942_0368 0.56 -1.1 361,475 - xseA Synpcc7942_0368 0.56 +0.1 361,475 - xseA Synpcc7942_0368 0.56 +0.4 361,475 - xseA Synpcc7942_0368 0.56 +0.3 361,485 - xseA Synpcc7942_0368 0.57 -0.4 361,485 - xseA Synpcc7942_0368 0.57 -0.2 361,486 - xseA Synpcc7942_0368 0.57 -2.5 361,496 - xseA Synpcc7942_0368 0.58 -1.7 361,499 - xseA Synpcc7942_0368 0.58 -0.5 361,506 + xseA Synpcc7942_0368 0.59 +2.1 361,514 - xseA Synpcc7942_0368 0.59 -1.7 361,536 + xseA Synpcc7942_0368 0.61 +0.5 361,544 - xseA Synpcc7942_0368 0.62 -0.7 361,553 + xseA Synpcc7942_0368 0.62 +1.3 361,553 + xseA Synpcc7942_0368 0.62 +0.4 361,561 - xseA Synpcc7942_0368 0.63 -2.4 361,587 - xseA Synpcc7942_0368 0.65 +0.9 361,633 + xseA Synpcc7942_0368 0.68 +0.6 361,638 + xseA Synpcc7942_0368 0.69 -0.6 361,638 + xseA Synpcc7942_0368 0.69 -2.2 361,641 - xseA Synpcc7942_0368 0.69 -0.5 361,654 + xseA Synpcc7942_0368 0.70 +0.7 361,662 - xseA Synpcc7942_0368 0.70 -0.4
Or see this region's nucleotide sequence