Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0066

Experiment: BG11 with nitrate 25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0063 and Synpcc7942_0064 overlap by 4 nucleotidesSynpcc7942_0064 and infC are separated by 116 nucleotidesinfC and Synpcc7942_0066 are separated by 116 nucleotidesSynpcc7942_0066 and Synpcc7942_0067 are separated by 4 nucleotidesSynpcc7942_0067 and Synpcc7942_0068 are separated by 4 nucleotides Synpcc7942_0063: Synpcc7942_0063 - dual specificity protein phosphatase, at 64,266 to 64,706 _0063 Synpcc7942_0064: Synpcc7942_0064 - hypothetical protein, at 64,703 to 64,870 _0064 Synpcc7942_0065: infC - translation initiation factor IF-3, at 64,987 to 65,541 infC Synpcc7942_0066: Synpcc7942_0066 - hypothetical protein, at 65,658 to 67,172 _0066 Synpcc7942_0067: Synpcc7942_0067 - probable permease protein of ABC transporter, at 67,177 to 67,986 _0067 Synpcc7942_0068: Synpcc7942_0068 - ATPase, at 67,991 to 68,980 _0068 Position (kb) 65 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 64.710 kb on + strandat 64.722 kb on - strand, within Synpcc7942_0064at 64.724 kb on + strand, within Synpcc7942_0064at 64.724 kb on + strand, within Synpcc7942_0064at 64.724 kb on + strand, within Synpcc7942_0064at 64.724 kb on + strand, within Synpcc7942_0064at 64.724 kb on + strand, within Synpcc7942_0064at 64.732 kb on - strand, within Synpcc7942_0064at 64.732 kb on - strand, within Synpcc7942_0064at 64.734 kb on + strand, within Synpcc7942_0064at 64.734 kb on - strand, within Synpcc7942_0064at 64.783 kb on - strand, within Synpcc7942_0064at 65.691 kb on + strandat 65.700 kb on + strandat 65.708 kb on - strandat 65.731 kb on - strandat 65.761 kb on + strandat 65.847 kb on + strand, within Synpcc7942_0066at 65.863 kb on + strand, within Synpcc7942_0066at 65.871 kb on - strand, within Synpcc7942_0066at 65.871 kb on - strand, within Synpcc7942_0066at 65.871 kb on - strandat 65.871 kb on - strand, within Synpcc7942_0066at 65.871 kb on - strand, within Synpcc7942_0066at 65.952 kb on - strand, within Synpcc7942_0066at 65.969 kb on + strand, within Synpcc7942_0066at 65.969 kb on + strand, within Synpcc7942_0066at 65.970 kb on + strand, within Synpcc7942_0066at 65.977 kb on - strand, within Synpcc7942_0066at 65.999 kb on + strand, within Synpcc7942_0066at 66.007 kb on - strand, within Synpcc7942_0066at 66.018 kb on + strand, within Synpcc7942_0066at 66.023 kb on + strand, within Synpcc7942_0066at 66.040 kb on - strand, within Synpcc7942_0066at 66.075 kb on + strand, within Synpcc7942_0066at 66.149 kb on - strand, within Synpcc7942_0066at 66.168 kb on + strand, within Synpcc7942_0066at 66.174 kb on + strand, within Synpcc7942_0066at 66.182 kb on - strand, within Synpcc7942_0066at 66.182 kb on - strand, within Synpcc7942_0066at 66.209 kb on + strand, within Synpcc7942_0066at 66.224 kb on + strand, within Synpcc7942_0066at 66.225 kb on - strand, within Synpcc7942_0066at 66.253 kb on + strand, within Synpcc7942_0066at 66.258 kb on + strand, within Synpcc7942_0066at 66.260 kb on - strand, within Synpcc7942_0066at 66.261 kb on - strand, within Synpcc7942_0066at 66.266 kb on - strand, within Synpcc7942_0066at 66.272 kb on + strand, within Synpcc7942_0066at 66.280 kb on - strand, within Synpcc7942_0066at 66.280 kb on - strand, within Synpcc7942_0066at 66.280 kb on - strand, within Synpcc7942_0066at 66.308 kb on + strand, within Synpcc7942_0066at 66.308 kb on - strand, within Synpcc7942_0066at 66.316 kb on - strand, within Synpcc7942_0066at 66.339 kb on + strand, within Synpcc7942_0066at 66.378 kb on - strand, within Synpcc7942_0066at 66.382 kb on - strand, within Synpcc7942_0066at 66.387 kb on - strand, within Synpcc7942_0066at 66.393 kb on + strand, within Synpcc7942_0066at 66.405 kb on + strand, within Synpcc7942_0066at 66.425 kb on + strand, within Synpcc7942_0066at 66.433 kb on - strandat 66.435 kb on + strand, within Synpcc7942_0066at 66.458 kb on + strand, within Synpcc7942_0066at 66.466 kb on + strand, within Synpcc7942_0066at 66.466 kb on + strand, within Synpcc7942_0066at 66.466 kb on + strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.541 kb on + strand, within Synpcc7942_0066at 66.541 kb on + strand, within Synpcc7942_0066at 66.541 kb on + strand, within Synpcc7942_0066at 66.541 kb on + strand, within Synpcc7942_0066at 66.541 kb on + strand, within Synpcc7942_0066at 66.548 kb on - strand, within Synpcc7942_0066at 66.549 kb on - strand, within Synpcc7942_0066at 66.549 kb on - strand, within Synpcc7942_0066at 66.549 kb on - strand, within Synpcc7942_0066at 66.549 kb on - strand, within Synpcc7942_0066at 66.549 kb on - strand, within Synpcc7942_0066at 66.562 kb on - strand, within Synpcc7942_0066at 66.573 kb on - strand, within Synpcc7942_0066at 66.573 kb on - strand, within Synpcc7942_0066at 66.596 kb on - strand, within Synpcc7942_0066at 66.596 kb on - strand, within Synpcc7942_0066at 66.606 kb on - strand, within Synpcc7942_0066at 66.606 kb on - strand, within Synpcc7942_0066at 66.606 kb on - strand, within Synpcc7942_0066at 66.617 kb on + strand, within Synpcc7942_0066at 66.627 kb on - strand, within Synpcc7942_0066at 66.628 kb on + strand, within Synpcc7942_0066at 66.649 kb on + strand, within Synpcc7942_0066at 66.671 kb on - strand, within Synpcc7942_0066at 66.766 kb on - strand, within Synpcc7942_0066at 66.797 kb on + strand, within Synpcc7942_0066at 66.797 kb on + strand, within Synpcc7942_0066at 66.805 kb on - strand, within Synpcc7942_0066at 66.805 kb on - strand, within Synpcc7942_0066at 66.810 kb on + strand, within Synpcc7942_0066at 66.868 kb on + strand, within Synpcc7942_0066at 66.868 kb on + strand, within Synpcc7942_0066at 66.885 kb on + strand, within Synpcc7942_0066at 66.919 kb on + strand, within Synpcc7942_0066at 66.939 kb on - strand, within Synpcc7942_0066at 66.955 kb on + strand, within Synpcc7942_0066at 67.034 kb on - strandat 67.034 kb on - strandat 67.071 kb on + strandat 67.079 kb on - strandat 67.081 kb on + strandat 67.099 kb on - strandat 67.112 kb on + strandat 67.112 kb on + strandat 67.133 kb on - strandat 67.133 kb on - strandat 67.133 kb on - strandat 67.136 kb on + strandat 67.174 kb on + strandat 67.180 kb on + strandat 67.182 kb on - strandat 67.217 kb on + strandat 67.217 kb on + strandat 67.217 kb on + strandat 67.217 kb on + strandat 67.222 kb on + strandat 67.227 kb on + strandat 67.227 kb on + strandat 67.246 kb on + strandat 67.264 kb on + strand, within Synpcc7942_0067at 67.293 kb on + strand, within Synpcc7942_0067at 67.325 kb on - strand, within Synpcc7942_0067at 67.338 kb on - strand, within Synpcc7942_0067at 67.356 kb on + strand, within Synpcc7942_0067at 67.363 kb on + strand, within Synpcc7942_0067at 67.365 kb on - strand, within Synpcc7942_0067at 67.366 kb on + strand, within Synpcc7942_0067at 67.366 kb on + strand, within Synpcc7942_0067at 67.374 kb on - strand, within Synpcc7942_0067at 67.374 kb on - strandat 67.374 kb on - strand, within Synpcc7942_0067at 67.374 kb on - strand, within Synpcc7942_0067at 67.381 kb on - strand, within Synpcc7942_0067at 67.389 kb on + strand, within Synpcc7942_0067at 67.399 kb on + strand, within Synpcc7942_0067at 67.399 kb on + strand, within Synpcc7942_0067at 67.433 kb on + strand, within Synpcc7942_0067at 67.443 kb on + strand, within Synpcc7942_0067at 67.451 kb on + strand, within Synpcc7942_0067at 67.451 kb on + strand, within Synpcc7942_0067at 67.456 kb on + strand, within Synpcc7942_0067at 67.459 kb on - strand, within Synpcc7942_0067at 67.459 kb on - strand, within Synpcc7942_0067at 67.464 kb on - strand, within Synpcc7942_0067at 67.464 kb on - strand, within Synpcc7942_0067at 67.479 kb on + strandat 67.479 kb on + strand, within Synpcc7942_0067at 67.487 kb on - strand, within Synpcc7942_0067at 67.493 kb on - strand, within Synpcc7942_0067at 67.536 kb on + strand, within Synpcc7942_0067at 67.568 kb on + strand, within Synpcc7942_0067at 67.591 kb on + strand, within Synpcc7942_0067at 67.601 kb on + strand, within Synpcc7942_0067at 67.621 kb on - strand, within Synpcc7942_0067at 67.625 kb on + strand, within Synpcc7942_0067at 67.625 kb on + strand, within Synpcc7942_0067at 67.625 kb on + strand, within Synpcc7942_0067at 67.633 kb on - strand, within Synpcc7942_0067at 67.664 kb on - strand, within Synpcc7942_0067at 67.664 kb on - strand, within Synpcc7942_0067at 67.680 kb on + strand, within Synpcc7942_0067at 67.685 kb on + strand, within Synpcc7942_0067at 67.685 kb on + strand, within Synpcc7942_0067at 67.688 kb on - strand, within Synpcc7942_0067at 67.688 kb on - strand, within Synpcc7942_0067at 67.688 kb on - strand, within Synpcc7942_0067at 67.693 kb on - strand, within Synpcc7942_0067at 67.694 kb on + strand, within Synpcc7942_0067at 67.698 kb on - strand, within Synpcc7942_0067at 67.732 kb on + strand, within Synpcc7942_0067at 67.732 kb on + strand, within Synpcc7942_0067at 67.742 kb on + strand, within Synpcc7942_0067at 67.750 kb on + strand, within Synpcc7942_0067at 67.750 kb on - strand, within Synpcc7942_0067at 67.750 kb on - strand, within Synpcc7942_0067at 67.750 kb on - strand, within Synpcc7942_0067at 67.758 kb on - strand, within Synpcc7942_0067at 67.791 kb on + strand, within Synpcc7942_0067at 67.793 kb on - strand, within Synpcc7942_0067at 67.929 kb on + strandat 67.934 kb on + strandat 67.942 kb on - strandat 67.950 kb on - strandat 67.952 kb on - strandat 67.968 kb on + strandat 67.976 kb on - strandat 67.988 kb on + strandat 67.988 kb on + strandat 67.996 kb on - strandat 67.996 kb on - strandat 68.018 kb on - strandat 68.067 kb on - strandat 68.080 kb on + strandat 68.080 kb on + strandat 68.082 kb on + strandat 68.082 kb on + strandat 68.090 kb on - strand, within Synpcc7942_0068at 68.090 kb on - strand, within Synpcc7942_0068at 68.090 kb on - strand, within Synpcc7942_0068at 68.090 kb on - strand, within Synpcc7942_0068at 68.090 kb on - strand, within Synpcc7942_0068at 68.105 kb on - strand, within Synpcc7942_0068at 68.166 kb on - strand, within Synpcc7942_0068at 68.167 kb on - strand, within Synpcc7942_0068

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with nitrate 25 mM
remove
64,710 + +0.5
64,722 - Synpcc7942_0064 0.11 +1.1
64,724 + Synpcc7942_0064 0.12 -1.6
64,724 + Synpcc7942_0064 0.12 -0.7
64,724 + Synpcc7942_0064 0.12 -1.4
64,724 + Synpcc7942_0064 0.12 +0.5
64,724 + Synpcc7942_0064 0.12 +1.1
64,732 - Synpcc7942_0064 0.17 +1.1
64,732 - Synpcc7942_0064 0.17 +0.1
64,734 + Synpcc7942_0064 0.18 +0.9
64,734 - Synpcc7942_0064 0.18 +0.7
64,783 - Synpcc7942_0064 0.48 +1.1
65,691 + +0.9
65,700 + -1.7
65,708 - -0.4
65,731 - +0.6
65,761 + -1.7
65,847 + Synpcc7942_0066 0.12 +0.7
65,863 + Synpcc7942_0066 0.14 +0.3
65,871 - Synpcc7942_0066 0.14 +0.3
65,871 - Synpcc7942_0066 0.14 -1.1
65,871 - +1.1
65,871 - Synpcc7942_0066 0.14 +1.4
65,871 - Synpcc7942_0066 0.14 -1.0
65,952 - Synpcc7942_0066 0.19 -1.1
65,969 + Synpcc7942_0066 0.21 +0.7
65,969 + Synpcc7942_0066 0.21 -2.0
65,970 + Synpcc7942_0066 0.21 -0.5
65,977 - Synpcc7942_0066 0.21 -1.6
65,999 + Synpcc7942_0066 0.23 -0.5
66,007 - Synpcc7942_0066 0.23 +0.1
66,018 + Synpcc7942_0066 0.24 -1.1
66,023 + Synpcc7942_0066 0.24 +1.1
66,040 - Synpcc7942_0066 0.25 +0.6
66,075 + Synpcc7942_0066 0.28 -1.7
66,149 - Synpcc7942_0066 0.32 -0.4
66,168 + Synpcc7942_0066 0.34 -2.8
66,174 + Synpcc7942_0066 0.34 +0.3
66,182 - Synpcc7942_0066 0.35 -1.2
66,182 - Synpcc7942_0066 0.35 -1.1
66,209 + Synpcc7942_0066 0.36 +1.1
66,224 + Synpcc7942_0066 0.37 -1.2
66,225 - Synpcc7942_0066 0.37 +0.7
66,253 + Synpcc7942_0066 0.39 +1.5
66,258 + Synpcc7942_0066 0.40 -1.7
66,260 - Synpcc7942_0066 0.40 +2.9
66,261 - Synpcc7942_0066 0.40 -1.0
66,266 - Synpcc7942_0066 0.40 -0.9
66,272 + Synpcc7942_0066 0.41 -0.9
66,280 - Synpcc7942_0066 0.41 -0.2
66,280 - Synpcc7942_0066 0.41 -0.7
66,280 - Synpcc7942_0066 0.41 -1.5
66,308 + Synpcc7942_0066 0.43 -0.4
66,308 - Synpcc7942_0066 0.43 -0.0
66,316 - Synpcc7942_0066 0.43 -0.7
66,339 + Synpcc7942_0066 0.45 -0.4
66,378 - Synpcc7942_0066 0.48 -0.5
66,382 - Synpcc7942_0066 0.48 -0.5
66,387 - Synpcc7942_0066 0.48 -1.4
66,393 + Synpcc7942_0066 0.49 +0.5
66,405 + Synpcc7942_0066 0.49 -1.7
66,425 + Synpcc7942_0066 0.51 -0.1
66,433 - +2.1
66,435 + Synpcc7942_0066 0.51 -1.5
66,458 + Synpcc7942_0066 0.53 -0.9
66,466 + Synpcc7942_0066 0.53 +0.7
66,466 + Synpcc7942_0066 0.53 -2.1
66,466 + Synpcc7942_0066 0.53 +0.3
66,474 - Synpcc7942_0066 0.54 -1.1
66,474 - Synpcc7942_0066 0.54 -0.4
66,474 - Synpcc7942_0066 0.54 -1.0
66,474 - Synpcc7942_0066 0.54 +0.3
66,474 - Synpcc7942_0066 0.54 -1.6
66,474 - Synpcc7942_0066 0.54 +0.4
66,541 + Synpcc7942_0066 0.58 +0.1
66,541 + Synpcc7942_0066 0.58 -0.9
66,541 + Synpcc7942_0066 0.58 +0.3
66,541 + Synpcc7942_0066 0.58 -0.3
66,541 + Synpcc7942_0066 0.58 -0.6
66,548 - Synpcc7942_0066 0.59 -0.1
66,549 - Synpcc7942_0066 0.59 -1.3
66,549 - Synpcc7942_0066 0.59 -1.0
66,549 - Synpcc7942_0066 0.59 -0.9
66,549 - Synpcc7942_0066 0.59 -0.3
66,549 - Synpcc7942_0066 0.59 +0.5
66,562 - Synpcc7942_0066 0.60 -0.5
66,573 - Synpcc7942_0066 0.60 -0.2
66,573 - Synpcc7942_0066 0.60 +0.6
66,596 - Synpcc7942_0066 0.62 -1.9
66,596 - Synpcc7942_0066 0.62 -0.4
66,606 - Synpcc7942_0066 0.63 +0.2
66,606 - Synpcc7942_0066 0.63 +1.3
66,606 - Synpcc7942_0066 0.63 -1.1
66,617 + Synpcc7942_0066 0.63 -0.6
66,627 - Synpcc7942_0066 0.64 -0.0
66,628 + Synpcc7942_0066 0.64 -0.9
66,649 + Synpcc7942_0066 0.65 +0.5
66,671 - Synpcc7942_0066 0.67 -3.1
66,766 - Synpcc7942_0066 0.73 -0.2
66,797 + Synpcc7942_0066 0.75 -0.8
66,797 + Synpcc7942_0066 0.75 -2.5
66,805 - Synpcc7942_0066 0.76 +0.5
66,805 - Synpcc7942_0066 0.76 -1.3
66,810 + Synpcc7942_0066 0.76 -1.4
66,868 + Synpcc7942_0066 0.80 +0.3
66,868 + Synpcc7942_0066 0.80 -0.6
66,885 + Synpcc7942_0066 0.81 -1.1
66,919 + Synpcc7942_0066 0.83 -2.1
66,939 - Synpcc7942_0066 0.85 -0.8
66,955 + Synpcc7942_0066 0.86 -0.8
67,034 - -0.6
67,034 - -0.0
67,071 + -0.0
67,079 - -0.0
67,081 + -2.2
67,099 - -0.3
67,112 + +1.7
67,112 + +1.6
67,133 - -0.3
67,133 - +0.3
67,133 - -0.6
67,136 + +0.2
67,174 + -0.1
67,180 + -2.5
67,182 - -0.6
67,217 + -0.8
67,217 + -1.3
67,217 + +0.2
67,217 + -0.4
67,222 + +0.7
67,227 + -0.2
67,227 + -2.7
67,246 + -3.6
67,264 + Synpcc7942_0067 0.11 -0.4
67,293 + Synpcc7942_0067 0.14 -1.1
67,325 - Synpcc7942_0067 0.18 -2.0
67,338 - Synpcc7942_0067 0.20 -1.8
67,356 + Synpcc7942_0067 0.22 +0.2
67,363 + Synpcc7942_0067 0.23 +0.1
67,365 - Synpcc7942_0067 0.23 +1.1
67,366 + Synpcc7942_0067 0.23 -1.3
67,366 + Synpcc7942_0067 0.23 +0.1
67,374 - Synpcc7942_0067 0.24 -2.2
67,374 - -0.7
67,374 - Synpcc7942_0067 0.24 +0.1
67,374 - Synpcc7942_0067 0.24 -0.6
67,381 - Synpcc7942_0067 0.25 -0.1
67,389 + Synpcc7942_0067 0.26 -2.9
67,399 + Synpcc7942_0067 0.27 +0.5
67,399 + Synpcc7942_0067 0.27 -0.2
67,433 + Synpcc7942_0067 0.32 +1.3
67,443 + Synpcc7942_0067 0.33 -0.7
67,451 + Synpcc7942_0067 0.34 -0.6
67,451 + Synpcc7942_0067 0.34 -1.5
67,456 + Synpcc7942_0067 0.34 +0.3
67,459 - Synpcc7942_0067 0.35 -0.3
67,459 - Synpcc7942_0067 0.35 -1.1
67,464 - Synpcc7942_0067 0.35 +0.2
67,464 - Synpcc7942_0067 0.35 -0.5
67,479 + +1.1
67,479 + Synpcc7942_0067 0.37 +0.2
67,487 - Synpcc7942_0067 0.38 -0.3
67,493 - Synpcc7942_0067 0.39 -0.6
67,536 + Synpcc7942_0067 0.44 -1.3
67,568 + Synpcc7942_0067 0.48 -0.0
67,591 + Synpcc7942_0067 0.51 -0.5
67,601 + Synpcc7942_0067 0.52 +0.1
67,621 - Synpcc7942_0067 0.55 -0.3
67,625 + Synpcc7942_0067 0.55 +0.1
67,625 + Synpcc7942_0067 0.55 -0.7
67,625 + Synpcc7942_0067 0.55 -1.3
67,633 - Synpcc7942_0067 0.56 +0.6
67,664 - Synpcc7942_0067 0.60 -0.3
67,664 - Synpcc7942_0067 0.60 +2.1
67,680 + Synpcc7942_0067 0.62 +0.6
67,685 + Synpcc7942_0067 0.63 -2.5
67,685 + Synpcc7942_0067 0.63 -0.6
67,688 - Synpcc7942_0067 0.63 -1.6
67,688 - Synpcc7942_0067 0.63 +0.3
67,688 - Synpcc7942_0067 0.63 -0.7
67,693 - Synpcc7942_0067 0.64 -0.1
67,694 + Synpcc7942_0067 0.64 +0.5
67,698 - Synpcc7942_0067 0.64 -0.6
67,732 + Synpcc7942_0067 0.69 -1.8
67,732 + Synpcc7942_0067 0.69 +0.1
67,742 + Synpcc7942_0067 0.70 +1.3
67,750 + Synpcc7942_0067 0.71 +0.2
67,750 - Synpcc7942_0067 0.71 -1.8
67,750 - Synpcc7942_0067 0.71 -1.6
67,750 - Synpcc7942_0067 0.71 -1.1
67,758 - Synpcc7942_0067 0.72 -0.7
67,791 + Synpcc7942_0067 0.76 -0.3
67,793 - Synpcc7942_0067 0.76 -0.6
67,929 + -2.1
67,934 + +0.5
67,942 - +0.1
67,950 - -1.0
67,952 - +0.1
67,968 + -1.2
67,976 - -1.0
67,988 + -0.3
67,988 + +3.2
67,996 - -1.4
67,996 - -1.6
68,018 - +0.5
68,067 - -0.3
68,080 + +0.6
68,080 + +0.3
68,082 + +0.5
68,082 + -0.5
68,090 - Synpcc7942_0068 0.10 -0.7
68,090 - Synpcc7942_0068 0.10 +1.1
68,090 - Synpcc7942_0068 0.10 +2.1
68,090 - Synpcc7942_0068 0.10 +2.1
68,090 - Synpcc7942_0068 0.10 -1.1
68,105 - Synpcc7942_0068 0.12 -2.0
68,166 - Synpcc7942_0068 0.18 -0.0
68,167 - Synpcc7942_0068 0.18 +0.9

Or see this region's nucleotide sequence