Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS17070

Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS17065 and RALBFv3_RS17070 are separated by 9 nucleotidesRALBFv3_RS17070 and RALBFv3_RS17075 are separated by 125 nucleotides RALBFv3_RS17065: RALBFv3_RS17065 - MFS transporter, at 315,033 to 316,463 _RS17065 RALBFv3_RS17070: RALBFv3_RS17070 - aldo/keto reductase, at 316,473 to 317,324 _RS17070 RALBFv3_RS17075: RALBFv3_RS17075 - LysR family transcriptional regulator, at 317,450 to 318,436 _RS17075 Position (kb) 316 317 318Strain fitness (log2 ratio) -1 0 1 2 3at 315.646 kb on + strand, within RALBFv3_RS17065at 315.647 kb on - strand, within RALBFv3_RS17065at 315.647 kb on - strand, within RALBFv3_RS17065at 315.810 kb on + strand, within RALBFv3_RS17065at 316.030 kb on + strand, within RALBFv3_RS17065at 316.209 kb on + strand, within RALBFv3_RS17065at 316.209 kb on + strand, within RALBFv3_RS17065at 316.209 kb on + strand, within RALBFv3_RS17065at 316.288 kb on + strand, within RALBFv3_RS17065at 316.288 kb on + strand, within RALBFv3_RS17065at 316.288 kb on + strand, within RALBFv3_RS17065at 316.289 kb on - strand, within RALBFv3_RS17065at 316.350 kb on + strandat 316.351 kb on - strandat 316.393 kb on + strandat 316.393 kb on + strandat 316.394 kb on - strandat 316.394 kb on - strandat 316.565 kb on + strand, within RALBFv3_RS17070at 316.566 kb on - strand, within RALBFv3_RS17070at 316.955 kb on - strand, within RALBFv3_RS17070at 317.014 kb on + strand, within RALBFv3_RS17070at 317.015 kb on - strand, within RALBFv3_RS17070at 317.015 kb on - strand, within RALBFv3_RS17070at 317.015 kb on - strand, within RALBFv3_RS17070at 317.015 kb on - strand, within RALBFv3_RS17070at 317.015 kb on - strand, within RALBFv3_RS17070at 317.015 kb on - strand, within RALBFv3_RS17070at 317.026 kb on + strand, within RALBFv3_RS17070at 317.027 kb on - strand, within RALBFv3_RS17070at 317.177 kb on + strand, within RALBFv3_RS17070at 317.177 kb on + strand, within RALBFv3_RS17070at 317.178 kb on - strand, within RALBFv3_RS17070at 317.178 kb on - strand, within RALBFv3_RS17070at 317.178 kb on - strand, within RALBFv3_RS17070at 317.178 kb on - strand, within RALBFv3_RS17070at 317.179 kb on + strand, within RALBFv3_RS17070at 317.179 kb on + strand, within RALBFv3_RS17070at 317.180 kb on - strand, within RALBFv3_RS17070at 317.180 kb on - strand, within RALBFv3_RS17070at 317.180 kb on - strand, within RALBFv3_RS17070at 317.180 kb on - strand, within RALBFv3_RS17070at 317.180 kb on - strand, within RALBFv3_RS17070at 317.180 kb on - strand, within RALBFv3_RS17070at 317.180 kb on - strand, within RALBFv3_RS17070at 317.361 kb on + strandat 317.385 kb on - strandat 317.388 kb on + strandat 317.404 kb on + strandat 317.405 kb on - strandat 317.405 kb on - strandat 317.425 kb on - strandat 317.427 kb on + strandat 317.474 kb on - strandat 317.474 kb on - strandat 317.474 kb on - strandat 317.502 kb on + strandat 317.502 kb on + strandat 317.502 kb on + strandat 317.502 kb on + strandat 317.526 kb on + strandat 317.527 kb on - strandat 317.527 kb on - strandat 317.817 kb on + strand, within RALBFv3_RS17075at 317.818 kb on - strand, within RALBFv3_RS17075at 317.818 kb on - strand, within RALBFv3_RS17075at 317.966 kb on + strand, within RALBFv3_RS17075at 317.966 kb on + strand, within RALBFv3_RS17075at 317.967 kb on - strand, within RALBFv3_RS17075at 317.967 kb on - strand, within RALBFv3_RS17075at 317.978 kb on + strand, within RALBFv3_RS17075at 317.979 kb on - strand, within RALBFv3_RS17075at 318.049 kb on + strand, within RALBFv3_RS17075at 318.049 kb on + strand, within RALBFv3_RS17075at 318.049 kb on + strand, within RALBFv3_RS17075at 318.186 kb on + strand, within RALBFv3_RS17075at 318.187 kb on - strand, within RALBFv3_RS17075at 318.200 kb on + strand, within RALBFv3_RS17075at 318.200 kb on + strand, within RALBFv3_RS17075at 318.200 kb on + strand, within RALBFv3_RS17075at 318.200 kb on + strand, within RALBFv3_RS17075at 318.201 kb on - strand, within RALBFv3_RS17075at 318.201 kb on - strand, within RALBFv3_RS17075at 318.201 kb on - strand, within RALBFv3_RS17075at 318.201 kb on - strand, within RALBFv3_RS17075at 318.241 kb on + strand, within RALBFv3_RS17075at 318.241 kb on + strand, within RALBFv3_RS17075at 318.241 kb on + strand, within RALBFv3_RS17075at 318.241 kb on + strand, within RALBFv3_RS17075at 318.241 kb on + strand, within RALBFv3_RS17075at 318.242 kb on - strand, within RALBFv3_RS17075at 318.251 kb on + strand, within RALBFv3_RS17075at 318.251 kb on + strand, within RALBFv3_RS17075at 318.251 kb on + strand, within RALBFv3_RS17075at 318.251 kb on + strand, within RALBFv3_RS17075at 318.251 kb on + strand, within RALBFv3_RS17075at 318.252 kb on - strand, within RALBFv3_RS17075at 318.252 kb on - strand, within RALBFv3_RS17075at 318.252 kb on - strand, within RALBFv3_RS17075at 318.252 kb on - strand, within RALBFv3_RS17075at 318.256 kb on + strand, within RALBFv3_RS17075at 318.257 kb on - strand, within RALBFv3_RS17075at 318.260 kb on + strand, within RALBFv3_RS17075at 318.260 kb on + strand, within RALBFv3_RS17075at 318.260 kb on + strand, within RALBFv3_RS17075at 318.261 kb on - strand, within RALBFv3_RS17075at 318.261 kb on - strand, within RALBFv3_RS17075

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
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315,646 + RALBFv3_RS17065 0.43 -0.7
315,647 - RALBFv3_RS17065 0.43 +0.8
315,647 - RALBFv3_RS17065 0.43 -0.4
315,810 + RALBFv3_RS17065 0.54 +0.6
316,030 + RALBFv3_RS17065 0.70 +1.2
316,209 + RALBFv3_RS17065 0.82 -0.1
316,209 + RALBFv3_RS17065 0.82 +0.1
316,209 + RALBFv3_RS17065 0.82 +1.3
316,288 + RALBFv3_RS17065 0.88 -0.3
316,288 + RALBFv3_RS17065 0.88 +1.4
316,288 + RALBFv3_RS17065 0.88 +0.5
316,289 - RALBFv3_RS17065 0.88 -1.3
316,350 + +1.0
316,351 - +0.6
316,393 + -1.2
316,393 + -1.7
316,394 - -0.4
316,394 - +0.6
316,565 + RALBFv3_RS17070 0.11 +0.1
316,566 - RALBFv3_RS17070 0.11 +0.3
316,955 - RALBFv3_RS17070 0.57 -1.3
317,014 + RALBFv3_RS17070 0.63 -0.2
317,015 - RALBFv3_RS17070 0.64 -0.0
317,015 - RALBFv3_RS17070 0.64 +0.1
317,015 - RALBFv3_RS17070 0.64 +1.2
317,015 - RALBFv3_RS17070 0.64 +2.1
317,015 - RALBFv3_RS17070 0.64 +0.5
317,015 - RALBFv3_RS17070 0.64 -0.5
317,026 + RALBFv3_RS17070 0.65 -0.7
317,027 - RALBFv3_RS17070 0.65 +0.2
317,177 + RALBFv3_RS17070 0.83 +0.5
317,177 + RALBFv3_RS17070 0.83 +1.4
317,178 - RALBFv3_RS17070 0.83 +0.2
317,178 - RALBFv3_RS17070 0.83 +2.5
317,178 - RALBFv3_RS17070 0.83 -0.1
317,178 - RALBFv3_RS17070 0.83 +1.5
317,179 + RALBFv3_RS17070 0.83 -0.8
317,179 + RALBFv3_RS17070 0.83 +1.1
317,180 - RALBFv3_RS17070 0.83 -0.4
317,180 - RALBFv3_RS17070 0.83 -0.9
317,180 - RALBFv3_RS17070 0.83 -0.3
317,180 - RALBFv3_RS17070 0.83 -0.4
317,180 - RALBFv3_RS17070 0.83 -0.7
317,180 - RALBFv3_RS17070 0.83 +1.5
317,180 - RALBFv3_RS17070 0.83 +0.1
317,361 + -0.4
317,385 - -0.1
317,388 + +0.6
317,404 + -1.3
317,405 - +0.5
317,405 - -1.7
317,425 - -0.1
317,427 + -1.4
317,474 - -0.6
317,474 - +0.2
317,474 - -0.6
317,502 + -0.8
317,502 + -0.2
317,502 + +0.5
317,502 + -0.7
317,526 + +2.2
317,527 - -1.0
317,527 - +0.8
317,817 + RALBFv3_RS17075 0.37 -0.2
317,818 - RALBFv3_RS17075 0.37 -1.0
317,818 - RALBFv3_RS17075 0.37 +0.4
317,966 + RALBFv3_RS17075 0.52 +0.2
317,966 + RALBFv3_RS17075 0.52 +0.2
317,967 - RALBFv3_RS17075 0.52 -0.3
317,967 - RALBFv3_RS17075 0.52 +0.6
317,978 + RALBFv3_RS17075 0.53 -0.9
317,979 - RALBFv3_RS17075 0.54 -1.3
318,049 + RALBFv3_RS17075 0.61 +0.1
318,049 + RALBFv3_RS17075 0.61 -1.6
318,049 + RALBFv3_RS17075 0.61 +0.3
318,186 + RALBFv3_RS17075 0.75 +0.4
318,187 - RALBFv3_RS17075 0.75 +3.2
318,200 + RALBFv3_RS17075 0.76 +0.5
318,200 + RALBFv3_RS17075 0.76 +0.7
318,200 + RALBFv3_RS17075 0.76 +0.1
318,200 + RALBFv3_RS17075 0.76 -0.8
318,201 - RALBFv3_RS17075 0.76 -0.0
318,201 - RALBFv3_RS17075 0.76 +2.6
318,201 - RALBFv3_RS17075 0.76 +0.3
318,201 - RALBFv3_RS17075 0.76 -1.4
318,241 + RALBFv3_RS17075 0.80 -1.0
318,241 + RALBFv3_RS17075 0.80 +0.3
318,241 + RALBFv3_RS17075 0.80 +0.2
318,241 + RALBFv3_RS17075 0.80 -1.7
318,241 + RALBFv3_RS17075 0.80 -0.1
318,242 - RALBFv3_RS17075 0.80 -0.7
318,251 + RALBFv3_RS17075 0.81 -0.4
318,251 + RALBFv3_RS17075 0.81 +0.5
318,251 + RALBFv3_RS17075 0.81 -0.1
318,251 + RALBFv3_RS17075 0.81 +0.3
318,251 + RALBFv3_RS17075 0.81 -0.3
318,252 - RALBFv3_RS17075 0.81 +0.9
318,252 - RALBFv3_RS17075 0.81 +0.5
318,252 - RALBFv3_RS17075 0.81 -1.4
318,252 - RALBFv3_RS17075 0.81 +0.5
318,256 + RALBFv3_RS17075 0.82 -1.0
318,257 - RALBFv3_RS17075 0.82 +0.6
318,260 + RALBFv3_RS17075 0.82 +0.6
318,260 + RALBFv3_RS17075 0.82 +0.6
318,260 + RALBFv3_RS17075 0.82 -0.9
318,261 - RALBFv3_RS17075 0.82 +1.6
318,261 - RALBFv3_RS17075 0.82 -0.2

Or see this region's nucleotide sequence