Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS08950 and RALBFv3_RS08955 are separated by 56 nucleotides RALBFv3_RS08955 and RALBFv3_RS08960 overlap by 4 nucleotides RALBFv3_RS08960 and RALBFv3_RS08965 are separated by 154 nucleotides RALBFv3_RS08965 and RALBFv3_RS08970 are separated by 68 nucleotides
RALBFv3_RS08950: RALBFv3_RS08950 - alpha/beta hydrolase, at 1,975,523 to 1,976,383
_RS08950
RALBFv3_RS08955: RALBFv3_RS08955 - Cu(I)-responsive transcriptional regulator, at 1,976,440 to 1,976,916
_RS08955
RALBFv3_RS08960: RALBFv3_RS08960 - copper-translocating P-type ATPase, at 1,976,913 to 1,979,162
_RS08960
RALBFv3_RS08965: RALBFv3_RS08965 - copper chaperone, at 1,979,317 to 1,979,517
_RS08965
RALBFv3_RS08970: RALBFv3_RS08970 - OmpW family protein, at 1,979,586 to 1,980,311
_RS08970
Position (kb) 1976
1977
1978
1979
1980 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1976.109 kb on + strand, within RALBFv3_RS08950 at 1976.109 kb on + strand, within RALBFv3_RS08950 at 1976.110 kb on - strand, within RALBFv3_RS08950 at 1976.110 kb on - strand, within RALBFv3_RS08950 at 1976.418 kb on + strand at 1976.763 kb on - strand, within RALBFv3_RS08955 at 1976.763 kb on - strand, within RALBFv3_RS08955 at 1976.771 kb on + strand, within RALBFv3_RS08955 at 1976.772 kb on - strand, within RALBFv3_RS08955 at 1976.772 kb on - strand, within RALBFv3_RS08955 at 1977.080 kb on - strand at 1977.080 kb on - strand at 1977.872 kb on + strand, within RALBFv3_RS08960 at 1978.382 kb on + strand, within RALBFv3_RS08960 at 1978.560 kb on + strand, within RALBFv3_RS08960 at 1978.561 kb on - strand, within RALBFv3_RS08960 at 1978.594 kb on + strand, within RALBFv3_RS08960 at 1978.594 kb on + strand, within RALBFv3_RS08960 at 1978.594 kb on + strand, within RALBFv3_RS08960 at 1978.651 kb on + strand, within RALBFv3_RS08960 at 1978.664 kb on + strand, within RALBFv3_RS08960 at 1978.664 kb on + strand, within RALBFv3_RS08960 at 1978.665 kb on - strand, within RALBFv3_RS08960 at 1978.730 kb on - strand, within RALBFv3_RS08960 at 1979.200 kb on + strand at 1979.201 kb on - strand at 1979.240 kb on + strand at 1979.272 kb on + strand at 1979.273 kb on - strand at 1979.286 kb on - strand at 1979.286 kb on - strand at 1979.710 kb on + strand, within RALBFv3_RS08970 at 1979.711 kb on - strand, within RALBFv3_RS08970 at 1979.752 kb on + strand, within RALBFv3_RS08970 at 1979.752 kb on + strand, within RALBFv3_RS08970 at 1979.753 kb on - strand, within RALBFv3_RS08970 at 1979.753 kb on - strand, within RALBFv3_RS08970 at 1979.884 kb on + strand, within RALBFv3_RS08970 at 1979.884 kb on + strand, within RALBFv3_RS08970 at 1979.885 kb on - strand, within RALBFv3_RS08970 at 1979.885 kb on - strand, within RALBFv3_RS08970 at 1979.905 kb on + strand, within RALBFv3_RS08970 at 1979.992 kb on + strand, within RALBFv3_RS08970 at 1979.993 kb on - strand, within RALBFv3_RS08970
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days remove 1,976,109 + RALBFv3_RS08950 0.68 +0.2 1,976,109 + RALBFv3_RS08950 0.68 -1.0 1,976,110 - RALBFv3_RS08950 0.68 +2.2 1,976,110 - RALBFv3_RS08950 0.68 +0.3 1,976,418 + +0.4 1,976,763 - RALBFv3_RS08955 0.68 -0.3 1,976,763 - RALBFv3_RS08955 0.68 +0.3 1,976,771 + RALBFv3_RS08955 0.69 -0.3 1,976,772 - RALBFv3_RS08955 0.70 +0.2 1,976,772 - RALBFv3_RS08955 0.70 +0.7 1,977,080 - +0.6 1,977,080 - +0.3 1,977,872 + RALBFv3_RS08960 0.43 -0.5 1,978,382 + RALBFv3_RS08960 0.65 -0.8 1,978,560 + RALBFv3_RS08960 0.73 -0.0 1,978,561 - RALBFv3_RS08960 0.73 -0.0 1,978,594 + RALBFv3_RS08960 0.75 -1.0 1,978,594 + RALBFv3_RS08960 0.75 -0.8 1,978,594 + RALBFv3_RS08960 0.75 +1.2 1,978,651 + RALBFv3_RS08960 0.77 +0.4 1,978,664 + RALBFv3_RS08960 0.78 -1.5 1,978,664 + RALBFv3_RS08960 0.78 +0.3 1,978,665 - RALBFv3_RS08960 0.78 +4.5 1,978,730 - RALBFv3_RS08960 0.81 +0.8 1,979,200 + -0.7 1,979,201 - -0.9 1,979,240 + +0.5 1,979,272 + +1.1 1,979,273 - -0.0 1,979,286 - -0.5 1,979,286 - -0.0 1,979,710 + RALBFv3_RS08970 0.17 +0.0 1,979,711 - RALBFv3_RS08970 0.17 +0.1 1,979,752 + RALBFv3_RS08970 0.23 +1.4 1,979,752 + RALBFv3_RS08970 0.23 +0.2 1,979,753 - RALBFv3_RS08970 0.23 -0.7 1,979,753 - RALBFv3_RS08970 0.23 +0.6 1,979,884 + RALBFv3_RS08970 0.41 +0.5 1,979,884 + RALBFv3_RS08970 0.41 +0.5 1,979,885 - RALBFv3_RS08970 0.41 +0.9 1,979,885 - RALBFv3_RS08970 0.41 +0.6 1,979,905 + RALBFv3_RS08970 0.44 +0.7 1,979,992 + RALBFv3_RS08970 0.56 +1.0 1,979,993 - RALBFv3_RS08970 0.56 -0.3
Or see this region's nucleotide sequence