Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5915 and Pf1N1B4_5916 are separated by 33 nucleotides Pf1N1B4_5916 and Pf1N1B4_5917 are separated by 34 nucleotides Pf1N1B4_5917 and Pf1N1B4_5918 are separated by 323 nucleotides
Pf1N1B4_5915 - Transcriptional regulator, AraC family, at 357,290 to 357,757
_5915
Pf1N1B4_5916 - Similar to non-heme chloroperoxidase, sll5080 homolog, at 357,791 to 358,615
_5916
Pf1N1B4_5917 - Multimeric flavodoxin WrbA, at 358,650 to 359,225
_5917
Pf1N1B4_5918 - Disease resistance protein / Tetratricopeptide repeat-containing protein, at 359,549 to 362,353
_5918
Position (kb) 358
359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 357.747 kb on + strand at 357.747 kb on + strand at 357.748 kb on - strand at 357.755 kb on + strand at 357.871 kb on - strand at 357.998 kb on - strand at 358.033 kb on - strand, within Pf1N1B4_5916 at 358.149 kb on + strand, within Pf1N1B4_5916 at 358.398 kb on + strand, within Pf1N1B4_5916 at 358.398 kb on + strand, within Pf1N1B4_5916 at 358.399 kb on - strand, within Pf1N1B4_5916 at 358.576 kb on - strand at 358.578 kb on + strand at 358.578 kb on + strand at 358.655 kb on - strand at 358.655 kb on - strand at 358.655 kb on - strand at 358.655 kb on - strand at 358.655 kb on - strand at 359.041 kb on + strand, within Pf1N1B4_5917 at 359.042 kb on - strand, within Pf1N1B4_5917 at 359.042 kb on - strand, within Pf1N1B4_5917 at 359.042 kb on - strand, within Pf1N1B4_5917 at 359.123 kb on + strand, within Pf1N1B4_5917 at 359.203 kb on + strand at 359.203 kb on + strand at 359.325 kb on + strand at 359.347 kb on - strand at 359.402 kb on + strand at 359.403 kb on - strand at 359.403 kb on - strand at 359.502 kb on + strand at 359.503 kb on - strand at 359.503 kb on - strand at 359.522 kb on + strand at 359.598 kb on - strand at 359.819 kb on + strand at 359.819 kb on + strand at 359.819 kb on + strand at 359.820 kb on - strand at 359.881 kb on - strand, within Pf1N1B4_5918 at 359.881 kb on - strand, within Pf1N1B4_5918 at 359.924 kb on - strand, within Pf1N1B4_5918
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B remove 357,747 + -0.0 357,747 + -1.2 357,748 - -1.3 357,755 + -0.0 357,871 - -0.0 357,998 - -0.0 358,033 - Pf1N1B4_5916 0.29 -2.3 358,149 + Pf1N1B4_5916 0.43 -0.0 358,398 + Pf1N1B4_5916 0.74 -1.9 358,398 + Pf1N1B4_5916 0.74 -0.0 358,399 - Pf1N1B4_5916 0.74 -2.1 358,576 - -2.2 358,578 + -0.0 358,578 + -1.5 358,655 - -0.0 358,655 - -2.1 358,655 - +1.0 358,655 - -0.0 358,655 - -0.0 359,041 + Pf1N1B4_5917 0.68 -0.0 359,042 - Pf1N1B4_5917 0.68 -3.3 359,042 - Pf1N1B4_5917 0.68 -0.0 359,042 - Pf1N1B4_5917 0.68 -1.0 359,123 + Pf1N1B4_5917 0.82 -1.9 359,203 + -0.0 359,203 + -2.1 359,325 + -2.3 359,347 - -1.7 359,402 + -0.0 359,403 - -0.0 359,403 - -1.6 359,502 + -0.0 359,503 - -0.0 359,503 - -0.0 359,522 + -0.0 359,598 - -0.0 359,819 + -2.8 359,819 + -1.5 359,819 + -2.6 359,820 - -0.0 359,881 - Pf1N1B4_5918 0.12 -1.6 359,881 - Pf1N1B4_5918 0.12 -1.5 359,924 - Pf1N1B4_5918 0.13 -0.0
Or see this region's nucleotide sequence