Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5379

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
112,088	+		Pf1N1B4_5378	0.84	-0.0
112,088	+		Pf1N1B4_5378	0.84	+1.0
112,088	+		Pf1N1B4_5378	0.84	-0.0
112,088	+		Pf1N1B4_5378	0.84	-0.0
112,088	+		Pf1N1B4_5378	0.84	-0.0
112,088	+				-1.7
112,089	-		Pf1N1B4_5378	0.84	-0.0
112,089	-		Pf1N1B4_5378	0.84	-3.8
112,089	-		Pf1N1B4_5378	0.84	-0.0
112,089	-		Pf1N1B4_5378	0.84	-0.0
112,089	-		Pf1N1B4_5378	0.84	-0.0
112,332	+				-0.0
112,332	+				-0.0
112,333	-				-0.0
112,333	-				-0.0
112,333	-				-2.4
112,347	+				-1.8
112,347	+				-0.0
112,347	+				-0.0
112,347	+				-1.5
112,348	-				-1.1
112,348	-				-0.0
112,348	-				-0.0
112,348	-				-0.0
112,348	-				-2.5
112,348	-				-0.0
112,348	-				-1.8
112,348	-				-0.0
112,386	-				-0.0
112,427	+				-2.8
112,427	+				-0.0
112,431	+				-0.0
112,431	+				-0.0
112,431	+				-0.0
112,431	+				-1.4
112,431	+				-1.7
112,431	+				-0.0
112,431	+				-1.6
112,432	-				-3.4
112,432	-				-0.0
112,432	-				-0.0
112,432	-				-0.0
112,432	-				-0.0
112,432	-				-1.7
112,570	+				-0.0
112,570	+				-0.0
112,570	+				-2.6
112,571	-				-0.0
112,571	-				-0.0
112,636	+				-1.0
112,636	+				-0.0
112,649	+				-0.0
112,649	+				-0.0
112,650	-				-0.0
112,650	-				-0.0
112,650	-				-0.0
112,686	+				-0.0
112,686	+				-0.0
112,686	+				-0.7
112,687	-				-2.5
112,687	-				-0.0
112,843	+				-0.0
112,870	+				-0.0
112,871	-				-0.0
112,871	-				+1.0
112,903	+				-0.0
112,903	+				-1.3
112,903	+				-0.0
112,904	-				-0.0
112,904	-				-0.0
112,904	-				-2.3
112,904	-				-2.4
112,904	-				-0.0
112,912	+				-0.0
112,913	-				-0.0
112,913	-				-0.0
113,038	+				-0.0
113,038	+				-0.0
113,038	+				-0.0
113,038	+				-1.4
113,039	-				-0.0
113,133	+		Pf1N1B4_5379	0.29	-0.0
113,156	+		Pf1N1B4_5379	0.36	-0.0
113,360	+				-0.0
113,360	+				-0.0
113,361	-				-0.0
113,372	+				-0.0
113,407	+				-0.0
113,428	-				-1.6
113,629	+		Pf1N1B4_5380	0.33	-0.0
113,629	+		Pf1N1B4_5380	0.33	-1.8
113,629	+		Pf1N1B4_5380	0.33	-2.0
113,629	+				-0.0
113,630	-		Pf1N1B4_5380	0.33	-1.5
113,632	+		Pf1N1B4_5380	0.34	-1.6
113,632	+		Pf1N1B4_5380	0.34	-0.0
113,633	-		Pf1N1B4_5380	0.34	-1.8
113,633	-		Pf1N1B4_5380	0.34	-0.0
113,659	+		Pf1N1B4_5380	0.40	-1.9
113,659	+		Pf1N1B4_5380	0.40	-0.0
113,659	+		Pf1N1B4_5380	0.40	-2.7
113,659	+		Pf1N1B4_5380	0.40	-0.0
113,660	-				-1.5
113,682	+		Pf1N1B4_5380	0.45	-1.6
113,721	+		Pf1N1B4_5380	0.54	-1.6
113,758	+		Pf1N1B4_5380	0.63	-0.0
113,944	+				-0.0
113,944	+				-0.0
113,944	+				-0.0
113,944	+				-3.5
114,012	+				-1.1
114,012	+				-0.0
114,012	+				-0.0
114,012	+				-0.0
114,012	+				-0.0
114,012	+				-0.0
114,012	+				-0.0
114,013	-				-2.0
114,013	-				-0.0
114,013	-				-0.6
114,035	+				-0.0
114,101	+				-0.0
114,109	-				-0.7
114,143	+				-0.0
114,143	+				-0.0
114,143	+				-0.0
114,143	+				-0.0
114,143	+				-0.0
114,143	+				-0.0
114,143	+				-0.0
114,143	+				-0.0
114,143	+				-1.3
114,143	+				-1.9
114,143	+				-0.0
114,143	+				-0.0
114,143	+				-2.2
114,143	+				-0.0
114,143	+				-0.0
114,143	+				-0.0
114,143	+				-0.0
114,144	-				-0.0
114,144	-				-0.0
114,144	-				-2.1
114,147	+				-0.0
114,147	+				-0.0
114,147	+				-0.0
114,147	+				-0.6
114,147	+				-0.0
114,147	+				-2.6
114,147	+				-0.0
114,147	+				-0.0
114,147	+				-0.0
114,147	+				-0.0
114,147	+				-0.0
114,148	-				-0.0
114,148	-				-1.3
114,148	-				-0.0
114,148	-				-0.0
114,163	+				-0.0
114,163	+				-0.0
114,163	+				-0.0
114,164	-				-0.8
114,181	+				-0.0
114,181	+				-0.0
114,281	+		Pf1N1B4_5381	0.35	-2.7
114,286	+		Pf1N1B4_5381	0.37	-0.0
114,286	+		Pf1N1B4_5381	0.37	-4.5
114,320	+		Pf1N1B4_5381	0.49	-0.0
114,321	-		Pf1N1B4_5381	0.49	-0.0
114,343	+				-4.3
114,343	+		Pf1N1B4_5381	0.57	-0.0
114,343	+		Pf1N1B4_5381	0.57	-0.0
114,343	+		Pf1N1B4_5381	0.57	-1.9
114,343	+		Pf1N1B4_5381	0.57	-0.0
114,343	+		Pf1N1B4_5381	0.57	-0.0
114,343	+		Pf1N1B4_5381	0.57	-0.0
114,343	+		Pf1N1B4_5381	0.57	-0.0
114,343	+		Pf1N1B4_5381	0.57	+0.6