Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5291 and Pf1N1B4_5292 are separated by 986 nucleotides
Pf1N1B4_5291 - Putative reductase, at 44,935 to 46,248
_5291
Pf1N1B4_5292 - hypothetical protein, at 47,235 to 47,396
_5292
Position (kb) 47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 46.256 kb on - strand at 46.256 kb on - strand at 46.325 kb on + strand at 46.326 kb on - strand at 46.389 kb on - strand at 46.421 kb on + strand at 46.422 kb on - strand at 46.532 kb on - strand at 46.542 kb on + strand at 46.574 kb on - strand at 46.574 kb on - strand at 46.786 kb on + strand at 46.786 kb on + strand at 46.786 kb on + strand at 46.786 kb on + strand at 46.786 kb on + strand at 46.787 kb on - strand at 46.787 kb on - strand at 46.787 kb on - strand at 46.844 kb on + strand at 46.844 kb on + strand at 46.845 kb on - strand at 46.927 kb on + strand at 47.002 kb on + strand at 47.002 kb on + strand at 47.002 kb on + strand at 47.018 kb on + strand at 47.019 kb on - strand at 47.032 kb on + strand at 47.032 kb on + strand at 47.032 kb on + strand at 47.033 kb on - strand at 47.066 kb on + strand at 47.204 kb on + strand at 47.355 kb on + strand, within Pf1N1B4_5292 at 47.355 kb on + strand, within Pf1N1B4_5292 at 47.355 kb on + strand, within Pf1N1B4_5292 at 47.356 kb on - strand, within Pf1N1B4_5292 at 47.466 kb on + strand at 47.467 kb on - strand at 47.568 kb on + strand at 47.569 kb on - strand at 47.620 kb on + strand at 47.620 kb on + strand at 47.620 kb on + strand at 47.620 kb on + strand at 47.620 kb on + strand at 47.637 kb on + strand at 47.639 kb on + strand at 47.639 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.021 kb on + strand at 48.021 kb on + strand at 48.048 kb on + strand at 48.049 kb on - strand at 48.049 kb on - strand at 48.057 kb on + strand at 48.108 kb on + strand at 48.108 kb on + strand at 48.108 kb on + strand at 48.355 kb on + strand at 48.369 kb on + strand at 48.369 kb on + strand at 48.369 kb on + strand at 48.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B remove 46,256 - -0.0 46,256 - -0.0 46,325 + -2.5 46,326 - -0.0 46,389 - -0.0 46,421 + -0.0 46,422 - -0.0 46,532 - -0.5 46,542 + -0.0 46,574 - -1.2 46,574 - -1.2 46,786 + -0.0 46,786 + -3.2 46,786 + -0.0 46,786 + -2.5 46,786 + -2.0 46,787 - -2.0 46,787 - -0.0 46,787 - -2.0 46,844 + -1.1 46,844 + -1.8 46,845 - -2.0 46,927 + -0.0 47,002 + -0.7 47,002 + -0.0 47,002 + -3.1 47,018 + -0.0 47,019 - -1.7 47,032 + -1.6 47,032 + -2.3 47,032 + -0.0 47,033 - -1.9 47,066 + -3.2 47,204 + -0.0 47,355 + Pf1N1B4_5292 0.74 -0.0 47,355 + Pf1N1B4_5292 0.74 -0.0 47,355 + Pf1N1B4_5292 0.74 -2.6 47,356 - Pf1N1B4_5292 0.75 -0.0 47,466 + -0.0 47,467 - -1.8 47,568 + -0.0 47,569 - -1.7 47,620 + -0.0 47,620 + -0.0 47,620 + -2.8 47,620 + -0.0 47,620 + -0.0 47,637 + -2.3 47,639 + -0.0 47,639 + -0.4 47,670 + -0.0 47,670 + -0.0 47,670 + -2.5 47,670 + -0.0 47,670 + -0.0 47,670 + -0.0 47,670 + -0.0 47,670 + -0.0 47,670 + -0.0 48,013 + -0.0 48,013 + -0.0 48,013 + -0.0 48,013 + -0.0 48,013 + -1.9 48,013 + -0.0 48,013 + -2.1 48,021 + -0.0 48,021 + -0.0 48,048 + -0.0 48,049 - -0.0 48,049 - -0.0 48,057 + -0.0 48,108 + -0.0 48,108 + -0.0 48,108 + -0.0 48,355 + -1.6 48,369 + -2.8 48,369 + -0.0 48,369 + -1.1 48,369 + -1.4
Or see this region's nucleotide sequence