Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5224

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
3,854,188	-		Pf1N1B4_3456	0.57	-2.4
3,854,188	-				-0.0
3,854,191	-		Pf1N1B4_3456	0.58	-1.8
3,854,199	+		Pf1N1B4_3456	0.59	-0.0
3,854,239	-		Pf1N1B4_3456	0.66	-0.0
3,854,323	+		Pf1N1B4_3456	0.82	-2.3
3,854,323	+		Pf1N1B4_3456	0.82	-0.0
3,854,359	+		Pf1N1B4_3456	0.88	-0.0
3,854,360	-		Pf1N1B4_3456	0.89	-0.0
3,854,360	-		Pf1N1B4_3456	0.89	-1.2
3,854,360	-		Pf1N1B4_3456	0.89	-1.6
3,854,360	-		Pf1N1B4_3456	0.89	-0.4
3,854,364	+		Pf1N1B4_3456	0.89	-1.7
3,854,365	-		Pf1N1B4_3456	0.89	-1.2
3,854,570	+				-0.0
3,854,571	-				-0.9
3,854,571	-				-3.3
3,854,642	-		Pf1N1B4_3458	0.18	-0.0
3,854,642	-				-2.6
3,854,724	+		Pf1N1B4_3458	0.53	-1.4
3,854,725	-		Pf1N1B4_3458	0.53	-0.0
3,855,029	+				-0.7
3,855,029	+				-0.4
3,855,029	+				-2.4
3,855,029	+				-0.0
3,855,030	-				-1.3
3,855,035	+				-0.0
3,855,036	-				-1.9
3,855,036	-				-1.7
3,855,133	+				-1.8
3,855,146	+		Pf1N1B4_5224	0.27	-0.0
3,855,146	+		Pf1N1B4_5224	0.27	-3.3
3,855,147	-		Pf1N1B4_5224	0.28	-1.6
3,855,162	+		Pf1N1B4_5224	0.49	-1.7
3,855,162	+		Pf1N1B4_5224	0.49	-0.0
3,855,163	-		Pf1N1B4_5224	0.50	-2.0
3,855,205	+				-0.7
3,855,205	+				-0.0
3,855,205	+				-0.0
3,855,205	+				-0.0
3,855,205	+				-0.0
3,855,205	+				-2.5
3,855,206	-				-0.0
3,855,300	+				-1.8
3,855,300	+				-0.0
3,855,300	+				-0.0
3,855,300	+				+0.6
3,855,300	+				-1.7
3,855,301	-				-0.0
3,855,301	-				-0.0
3,855,301	-				-0.0
3,855,301	-				-0.0
3,855,387	+				-1.4
3,855,539	+				-0.0
3,855,540	-				-0.0
3,855,540	-				-0.0
3,855,578	+				-2.0
3,855,579	-				-2.1
3,855,579	-				+0.1
3,855,579	-				-0.0
3,855,579	-				-0.0
3,855,588	+				-0.0
3,855,589	-				-0.0
3,855,589	-				-0.0
3,855,589	-				-0.0
3,855,667	+				-0.0
3,855,667	+				-1.9
3,855,667	+				-2.4
3,855,667	+				-1.9
3,855,668	-				-1.0
3,855,668	-				-0.0
3,855,716	+				-2.3
3,855,717	-				-0.0
3,855,717	-				-1.7
3,855,717	-				-0.0
3,855,717	-				-1.5
3,855,770	+				-2.1
3,855,770	+				-0.0
3,855,771	-				-0.0
3,855,854	+				-0.0
3,855,855	-				-0.0
3,856,108	+		Pf1N1B4_3459	0.11	-2.6
3,856,109	-		Pf1N1B4_3459	0.11	-2.4