Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4638 and Pf1N1B4_4639 overlap by 4 nucleotides Pf1N1B4_4639 and Pf1N1B4_4640 are separated by 5 nucleotides Pf1N1B4_4640 and Pf1N1B4_4641 are separated by 289 nucleotides Pf1N1B4_4641 and Pf1N1B4_4642 are separated by 186 nucleotides
Pf1N1B4_4638 - FIG00954674: hypothetical protein, at 5,115,420 to 5,115,914
_4638
Pf1N1B4_4639 - hypothetical protein PA3071, at 5,115,911 to 5,116,855
_4639
Pf1N1B4_4640 - MoxR-like ATPase in aerotolerance operon, at 5,116,861 to 5,117,820
_4640
Pf1N1B4_4641 - FIG00954580: hypothetical protein, at 5,118,110 to 5,118,463
_4641
Pf1N1B4_4642 - hypothetical protein, at 5,118,650 to 5,118,763
_4642
Position (kb) 5116
5117
5118 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5115.945 kb on + strand at 5115.946 kb on - strand at 5116.059 kb on + strand, within Pf1N1B4_4639 at 5116.125 kb on - strand, within Pf1N1B4_4639 at 5116.280 kb on + strand, within Pf1N1B4_4639 at 5116.281 kb on - strand, within Pf1N1B4_4639 at 5116.960 kb on + strand, within Pf1N1B4_4640 at 5116.961 kb on - strand, within Pf1N1B4_4640 at 5117.147 kb on + strand, within Pf1N1B4_4640 at 5117.147 kb on + strand, within Pf1N1B4_4640 at 5117.171 kb on + strand, within Pf1N1B4_4640 at 5117.171 kb on + strand, within Pf1N1B4_4640 at 5117.171 kb on + strand, within Pf1N1B4_4640 at 5117.172 kb on - strand, within Pf1N1B4_4640 at 5117.172 kb on - strand, within Pf1N1B4_4640 at 5117.358 kb on - strand, within Pf1N1B4_4640 at 5117.421 kb on - strand at 5118.126 kb on + strand at 5118.126 kb on + strand at 5118.126 kb on + strand at 5118.126 kb on + strand at 5118.126 kb on + strand at 5118.126 kb on + strand at 5118.126 kb on + strand at 5118.126 kb on + strand at 5118.126 kb on + strand at 5118.126 kb on + strand at 5118.127 kb on - strand at 5118.127 kb on - strand at 5118.130 kb on + strand at 5118.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B remove 5,115,945 + -0.0 5,115,946 - -0.0 5,116,059 + Pf1N1B4_4639 0.16 -1.8 5,116,125 - Pf1N1B4_4639 0.23 -4.9 5,116,280 + Pf1N1B4_4639 0.39 -0.0 5,116,281 - Pf1N1B4_4639 0.39 -0.0 5,116,960 + Pf1N1B4_4640 0.10 -0.0 5,116,961 - Pf1N1B4_4640 0.10 -2.0 5,117,147 + Pf1N1B4_4640 0.30 -2.0 5,117,147 + Pf1N1B4_4640 0.30 -3.1 5,117,171 + Pf1N1B4_4640 0.32 -0.0 5,117,171 + Pf1N1B4_4640 0.32 -0.0 5,117,171 + Pf1N1B4_4640 0.32 -2.9 5,117,172 - Pf1N1B4_4640 0.32 -0.0 5,117,172 - Pf1N1B4_4640 0.32 -0.0 5,117,358 - Pf1N1B4_4640 0.52 -0.0 5,117,421 - -0.0 5,118,126 + -0.0 5,118,126 + -0.0 5,118,126 + -3.1 5,118,126 + -0.0 5,118,126 + -2.2 5,118,126 + -2.6 5,118,126 + -2.8 5,118,126 + -0.9 5,118,126 + -1.3 5,118,126 + -0.0 5,118,127 - -1.1 5,118,127 - -0.0 5,118,130 + -0.0 5,118,620 + -0.0
Or see this region's nucleotide sequence