Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4049

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
4,501,709	-				-2.3
4,501,709	-		Pf1N1B4_4049	0.13	-1.7
4,501,806	+		Pf1N1B4_4049	0.35	+0.0
4,501,854	+		Pf1N1B4_4049	0.46	-2.3
4,501,854	+		Pf1N1B4_4049	0.46	+0.0
4,501,855	-		Pf1N1B4_4049	0.46	-2.5
4,501,881	+		Pf1N1B4_4049	0.52	+0.0
4,501,881	+		Pf1N1B4_4049	0.52	+0.0
4,501,881	+		Pf1N1B4_4049	0.52	-3.3
4,501,887	+				-3.8
4,501,887	+		Pf1N1B4_4049	0.53	+0.0
4,501,887	+		Pf1N1B4_4049	0.53	-1.0
4,501,887	+		Pf1N1B4_4049	0.53	+0.0
4,501,887	+		Pf1N1B4_4049	0.53	-3.2
4,502,239	+				-2.9
4,502,239	+				-1.7
4,502,240	-				-1.8
4,502,240	-				-2.4
4,502,240	-				-1.0
4,502,240	-				-1.2
4,502,240	-				-2.3
4,502,240	-				+0.0
4,502,240	-				+0.0
4,502,240	-				+0.0
4,502,240	-				-1.7
4,502,240	-				+0.0
4,502,240	-				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				-1.0
4,502,243	+				-4.3
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				-1.7
4,502,243	+				+0.0
4,502,244	-				+0.0
4,502,244	-				-1.7
4,502,244	-				+0.0
4,502,244	-				+0.0
4,502,244	-				-2.2
4,502,247	+				+0.0
4,502,247	+				+0.0
4,502,247	+				-3.1
4,502,247	+				+0.0
4,502,248	-				-0.3
4,502,248	-				-1.8
4,502,302	+				+0.0
4,502,310	+				-1.8
4,502,551	-				+0.0
4,502,663	-				+0.0
4,502,673	+		Pf1N1B4_4051	0.10	-1.6
4,502,674	-		Pf1N1B4_4051	0.10	-2.0
4,502,674	-		Pf1N1B4_4051	0.10	+0.0
4,502,678	-		Pf1N1B4_4051	0.10	+0.0
4,503,004	-		Pf1N1B4_4051	0.26	+0.0
4,503,020	+		Pf1N1B4_4051	0.27	+0.0
4,503,020	+		Pf1N1B4_4051	0.27	+0.0