Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3547

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
3,952,808	-				-0.0
3,952,848	+				-0.0
3,952,848	+				-0.0
3,952,875	+				-0.0
3,952,875	+				-1.0
3,952,876	-				-0.0
3,952,876	-				-0.0
3,952,906	-				-0.8
3,953,112	+		Pf1N1B4_3546	0.46	-1.9
3,953,113	-		Pf1N1B4_3546	0.46	-0.0
3,953,113	-				-2.1
3,953,358	+				-0.2
3,953,358	+				-0.0
3,953,359	-				-0.0
3,953,359	-				-0.0
3,953,359	-				-2.2
3,953,359	-				-1.6
3,953,437	+				-0.0
3,953,437	+				-1.7
3,953,438	-				-0.0
3,953,438	-				-0.9
3,953,438	-				-0.0
3,953,520	+				-0.0
3,953,521	-				-0.0
3,953,521	-				-0.0
3,953,614	-				-0.0
3,953,660	+				-0.0
3,953,701	-				-0.0
3,953,727	+				-0.0
3,953,727	+				-0.0
3,953,728	-				-1.7
3,953,730	+				-0.0
3,953,730	+				-2.7
3,953,730	+				-0.0
3,953,730	+				-1.4
3,953,731	-				-0.0
3,953,731	-				+1.0
3,953,731	-				-1.8
3,953,731	-				-0.0
3,953,731	-				-1.3
3,953,733	+				-0.0
3,953,832	+		Pf1N1B4_3547	0.17	-2.6
3,953,833	-		Pf1N1B4_3547	0.17	-0.0
3,954,100	-		Pf1N1B4_3547	0.56	-0.0
3,954,340	+				-0.0
3,954,340	+				+1.0
3,954,341	-				-0.0
3,954,377	+				-0.0
3,954,377	+				-3.0
3,954,377	+				-0.0
3,954,378	-				-0.0
3,954,378	-				-0.0
3,954,378	-				-0.0
3,954,380	+				-0.0
3,954,381	-				-1.2
3,954,474	+		Pf1N1B4_3548	0.17	-0.0
3,954,622	+		Pf1N1B4_3548	0.53	-0.0
3,954,624	-		Pf1N1B4_3548	0.54	-0.0
3,954,834	+				-0.0
3,954,873	-				-0.0
3,954,987	+		Pf1N1B4_3549	0.20	-0.0
3,954,987	+		Pf1N1B4_3549	0.20	-0.0
3,954,988	-		Pf1N1B4_3549	0.21	-0.0
3,954,988	-				-0.0
3,954,988	-		Pf1N1B4_3549	0.21	-2.2
3,955,112	+		Pf1N1B4_3549	0.62	-1.8
3,955,113	-		Pf1N1B4_3549	0.62	-0.0
3,955,133	-				-0.0
3,955,133	-		Pf1N1B4_3549	0.69	-0.0
3,955,219	-				-1.8