Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3134

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
3,517,813	+				-2.7
3,517,813	+		Pf1N1B4_3133	0.15	-2.4
3,517,813	+		Pf1N1B4_3133	0.15	+0.0
3,517,813	+		Pf1N1B4_3133	0.15	+0.0
3,517,814	-		Pf1N1B4_3133	0.15	+0.0
3,518,090	-				-1.5
3,518,131	+		Pf1N1B4_3133	0.43	+0.0
3,518,131	+		Pf1N1B4_3133	0.43	-2.2
3,518,131	+		Pf1N1B4_3133	0.43	+0.0
3,518,131	+		Pf1N1B4_3133	0.43	+0.0
3,518,131	+		Pf1N1B4_3133	0.43	-1.2
3,518,131	+		Pf1N1B4_3133	0.43	+0.0
3,518,131	+		Pf1N1B4_3133	0.43	-1.1
3,518,132	-		Pf1N1B4_3133	0.43	+0.0
3,518,152	+		Pf1N1B4_3133	0.45	-1.6
3,518,152	+		Pf1N1B4_3133	0.45	-1.6
3,518,152	+		Pf1N1B4_3133	0.45	+0.0
3,518,152	+		Pf1N1B4_3133	0.45	-1.8
3,518,152	+		Pf1N1B4_3133	0.45	+0.0
3,518,152	+		Pf1N1B4_3133	0.45	+0.0
3,518,152	+		Pf1N1B4_3133	0.45	+0.0
3,518,153	-		Pf1N1B4_3133	0.45	+0.0
3,518,290	+				+0.0
3,518,291	-		Pf1N1B4_3133	0.57	+0.0
3,518,291	-		Pf1N1B4_3133	0.57	+0.0
3,518,344	+		Pf1N1B4_3133	0.61	+0.0
3,518,344	+		Pf1N1B4_3133	0.61	-2.5
3,518,345	-		Pf1N1B4_3133	0.61	+0.0
3,518,345	-		Pf1N1B4_3133	0.61	+0.0
3,518,461	+		Pf1N1B4_3133	0.72	+0.0
3,518,461	+		Pf1N1B4_3133	0.72	-2.3
3,518,541	+		Pf1N1B4_3133	0.79	+0.0
3,518,548	-		Pf1N1B4_3133	0.79	+0.0
3,518,627	-		Pf1N1B4_3133	0.86	-2.1
3,518,685	+				+0.0
3,518,716	+				-1.3
3,518,717	-				+0.0
3,518,717	-				-2.7
3,518,792	+				-1.0
3,518,824	+				+0.0
3,518,824	+				-2.0
3,518,824	+				+0.1
3,518,824	+				-2.4
3,518,824	+				+0.0
3,518,825	-				-0.9
3,518,825	-				-1.2
3,519,000	+		Pf1N1B4_3134	0.42	-2.6
3,519,000	+		Pf1N1B4_3134	0.42	+0.0
3,519,000	+		Pf1N1B4_3134	0.42	+0.0
3,519,326	+				+0.0
3,519,326	+				-1.6
3,519,326	+				-1.0
3,519,326	+				+0.0
3,519,327	-				+0.0
3,519,414	+				+0.0
3,519,415	-				-2.4
3,519,436	+				+0.0
3,519,436	+				+0.0
3,519,436	+				+0.0
3,519,437	-				-1.5
3,519,577	+		Pf1N1B4_3135	0.13	+0.0
3,519,578	-				+0.0
3,519,684	+		Pf1N1B4_3135	0.24	+0.0
3,519,685	-		Pf1N1B4_3135	0.24	+0.0
3,519,685	-		Pf1N1B4_3135	0.24	+0.0
3,519,733	+		Pf1N1B4_3135	0.28	+0.0
3,519,840	+		Pf1N1B4_3135	0.39	-3.5
3,519,840	+		Pf1N1B4_3135	0.39	+0.0
3,519,843	+		Pf1N1B4_3135	0.39	-2.4
3,519,843	+		Pf1N1B4_3135	0.39	-1.0
3,519,844	-		Pf1N1B4_3135	0.39	+0.0
3,519,942	+		Pf1N1B4_3135	0.49	-1.9
3,519,942	+		Pf1N1B4_3135	0.49	-1.6
3,519,942	+		Pf1N1B4_3135	0.49	-1.4
3,519,943	-		Pf1N1B4_3135	0.49	+0.0