Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3023

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
3,399,694	+		Pf1N1B4_3022	0.67	+0.0
3,399,694	+		Pf1N1B4_3022	0.67	+0.0
3,399,695	-		Pf1N1B4_3022	0.67	+0.0
3,399,695	-		Pf1N1B4_3022	0.67	+0.0
3,399,695	-		Pf1N1B4_3022	0.67	+0.0
3,399,791	+		Pf1N1B4_3022	0.73	+0.0
3,399,792	-				+0.0
3,399,814	+		Pf1N1B4_3022	0.75	-2.3
3,399,877	+		Pf1N1B4_3022	0.79	+0.0
3,399,877	+		Pf1N1B4_3022	0.79	+0.0
3,399,877	+		Pf1N1B4_3022	0.79	+0.0
3,399,877	+		Pf1N1B4_3022	0.79	+0.0
3,399,877	+		Pf1N1B4_3022	0.79	+0.0
3,399,878	-		Pf1N1B4_3022	0.79	-2.0
3,399,878	-		Pf1N1B4_3022	0.79	+0.0
3,399,878	-		Pf1N1B4_3022	0.79	-1.0
3,399,878	-		Pf1N1B4_3022	0.79	+0.0
3,399,878	-		Pf1N1B4_3022	0.79	+0.0
3,399,878	-				-0.2
3,400,152	+				+0.0
3,400,152	+				+0.0
3,400,152	+				-1.4
3,400,177	+				-2.1
3,400,177	+				+0.0
3,400,178	-				-2.3
3,400,178	-				-1.4
3,400,222	+				-1.5
3,400,223	+				-1.3
3,400,223	+				+0.0
3,400,223	+				+0.0
3,400,223	+				-0.6
3,400,223	+				+0.0
3,400,223	+				+0.0
3,400,223	+				+0.0
3,400,223	+				-2.2
3,400,223	+				+0.0
3,400,223	+				-3.2
3,400,223	+				+0.0
3,400,223	+				+0.0
3,400,224	-				+0.0
3,400,224	-				+0.0
3,400,224	-				-1.9
3,400,224	-				+0.0
3,400,224	-				+0.0
3,400,224	-				+0.0
3,400,224	-				-2.0
3,400,224	-				-2.9
3,400,224	-				+0.0
3,400,224	-				-1.4
3,400,227	+				+0.0
3,400,227	+				-1.6
3,400,227	+				-0.8
3,400,227	+				+0.0
3,400,227	+				-1.3
3,400,227	+				-1.4
3,400,228	-				-1.8
3,400,228	-				+0.0
3,400,228	-				-1.6
3,400,320	+				+0.0
3,400,320	+				+0.0
3,400,320	+				+0.0
3,400,320	+				-2.3
3,400,321	-				+0.0
3,400,321	-				+0.0
3,400,321	-				+0.0
3,400,335	+				-0.7
3,400,336	-				+0.0
3,400,336	-				+0.0
3,400,336	-				+0.0
3,400,336	-				+0.0
3,400,341	+				+0.0
3,400,341	+				+0.0
3,400,342	-				-1.5
3,400,342	-				-1.1
3,400,342	-				-0.8
3,400,442	+				+0.0
3,400,443	-				+0.0
3,400,451	+				-0.6
3,400,451	+				+1.0
3,400,451	+				-1.6
3,400,451	+				-1.4
3,400,452	-				-1.1
3,400,468	+				+0.0
3,400,472	+				+0.0
3,400,472	+				+0.0
3,400,472	+				-1.2
3,400,509	+				+0.0
3,400,510	-				+0.0
3,400,510	-				+0.0
3,400,510	-				+0.0
3,400,510	-				-1.4
3,400,514	+				+0.0
3,400,584	+				+0.0
3,400,617	+				+0.0
3,400,617	+				+0.0
3,400,617	+				+0.0
3,400,617	+				-2.0
3,400,617	+				+0.0
3,400,617	+				+0.0
3,400,617	+				+0.0
3,400,617	+				+0.0
3,400,617	+				+0.0
3,400,617	+				+0.0
3,400,618	-				+0.0
3,400,618	-				+0.0
3,400,618	-				+0.0
3,400,618	-				+0.0
3,400,618	-				-1.9
3,400,618	-				+0.0
3,400,619	+				+0.0
3,400,619	+				-3.3
3,400,619	+				-1.7
3,400,619	+				-1.0
3,400,619	+				+0.0
3,400,619	+				-1.7
3,400,619	+				+0.0
3,400,619	+				-2.6
3,400,619	+				-1.7
3,400,619	+				-2.3
3,400,619	+				-3.1
3,400,619	+				+0.0
3,400,619	+				-2.2
3,400,619	+				-2.7
3,400,619	+				+0.0
3,400,620	-				+0.0
3,400,620	-				-1.2
3,400,620	-				-0.4
3,400,645	+				+0.0
3,400,645	+				-2.1
3,400,645	+				+0.0
3,400,645	+				+0.0
3,400,646	-				+0.0
3,400,646	-				+0.0
3,400,666	+		Pf1N1B4_3023	0.17	+0.0
3,400,667	-		Pf1N1B4_3023	0.17	+0.0
3,400,667	-		Pf1N1B4_3023	0.17	+0.0
3,400,667	-		Pf1N1B4_3023	0.17	-2.8
3,400,832	+				-1.4
3,400,955	+				+0.0
3,400,955	+				-1.2
3,400,955	+				+0.0
3,400,956	-				-0.9
3,400,956	-				-1.6
3,400,956	-				+0.0
3,400,988	+				+0.0
3,400,988	+				+0.0
3,400,988	+				+0.0
3,400,989	-				+0.0
3,400,989	-				-1.7
3,401,003	+				+0.0
3,401,003	+				+0.0
3,401,003	+				-1.9
3,401,004	-				+0.0
3,401,168	+		Pf1N1B4_3024	0.15	-4.6
3,401,169	-		Pf1N1B4_3024	0.15	+0.0
3,401,453	+		Pf1N1B4_3024	0.35	+0.0
3,401,454	-		Pf1N1B4_3024	0.35	+0.0
3,401,461	-		Pf1N1B4_3024	0.36	-0.9
3,401,501	+		Pf1N1B4_3024	0.38	+0.0
3,401,501	+		Pf1N1B4_3024	0.38	+0.0
3,401,502	-		Pf1N1B4_3024	0.38	-1.3
3,401,502	-		Pf1N1B4_3024	0.38	+0.0
3,401,502	-				-0.8
3,401,502	-		Pf1N1B4_3024	0.38	+0.0
3,401,502	-		Pf1N1B4_3024	0.38	+0.0
3,401,502	-		Pf1N1B4_3024	0.38	+0.0
3,401,519	+				-3.2
3,401,520	-		Pf1N1B4_3024	0.40	-1.7
3,401,520	-		Pf1N1B4_3024	0.40	-1.5
3,401,558	+		Pf1N1B4_3024	0.42	+0.0
3,401,558	+		Pf1N1B4_3024	0.42	-2.2
3,401,558	+		Pf1N1B4_3024	0.42	+1.0
3,401,559	-		Pf1N1B4_3024	0.42	+0.0
3,401,559	-		Pf1N1B4_3024	0.42	-1.5
3,401,559	-		Pf1N1B4_3024	0.42	-1.5
3,401,577	+		Pf1N1B4_3024	0.44	+0.0
3,401,577	+		Pf1N1B4_3024	0.44	+0.0
3,401,577	+		Pf1N1B4_3024	0.44	+0.0
3,401,578	-		Pf1N1B4_3024	0.44	+0.0
3,401,578	-		Pf1N1B4_3024	0.44	+0.0
3,401,584	+		Pf1N1B4_3024	0.44	-1.1
3,401,585	-		Pf1N1B4_3024	0.44	+0.0
3,401,728	+		Pf1N1B4_3024	0.54	+0.0
3,401,729	-		Pf1N1B4_3024	0.54	+0.0
3,401,778	-		Pf1N1B4_3024	0.58	-2.3
3,401,787	+		Pf1N1B4_3024	0.58	+0.0
3,401,787	+				-1.9
3,401,787	+		Pf1N1B4_3024	0.58	+0.0
3,401,787	+		Pf1N1B4_3024	0.58	+0.0
3,401,787	+		Pf1N1B4_3024	0.58	+0.0
3,401,788	-		Pf1N1B4_3024	0.59	-0.9
3,401,788	-		Pf1N1B4_3024	0.59	+0.0
3,401,788	-		Pf1N1B4_3024	0.59	-1.0
3,401,788	-		Pf1N1B4_3024	0.59	-0.9
3,401,791	+		Pf1N1B4_3024	0.59	+0.0
3,401,791	+		Pf1N1B4_3024	0.59	+0.0
3,401,791	+		Pf1N1B4_3024	0.59	-2.8
3,401,791	+		Pf1N1B4_3024	0.59	-1.7
3,401,791	+		Pf1N1B4_3024	0.59	-2.1
3,401,792	-		Pf1N1B4_3024	0.59	+0.0
3,401,792	-		Pf1N1B4_3024	0.59	+0.0
3,401,792	-		Pf1N1B4_3024	0.59	+0.0
3,401,792	-		Pf1N1B4_3024	0.59	+0.0