Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2971

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
3,331,649	+				+0.0
3,331,649	+				+0.0
3,331,649	+				+0.0
3,331,649	+				+0.0
3,331,649	+				+0.0
3,331,649	+				-1.5
3,331,649	+				+0.0
3,331,649	+				+0.0
3,331,650	-				+0.0
3,331,650	-				+0.0
3,331,691	+				-2.4
3,331,691	+				+0.0
3,331,692	-				+0.0
3,331,709	-				+0.0
3,331,723	+				+0.0
3,331,724	-				+0.0
3,331,765	+				+0.0
3,331,765	+				+0.0
3,331,766	-				+0.0
3,331,766	-				-0.9
3,331,766	-				+0.0
3,331,766	-				+0.0
3,331,766	-				-2.3
3,331,767	+				+0.0
3,331,767	+				+0.0
3,331,768	-				-2.1
3,331,768	-				+0.0
3,331,774	-				+0.0
3,331,792	-				-0.8
3,332,102	+		Pf1N1B4_2970	0.47	-2.5
3,332,489	-				-1.9
3,332,497	+				+0.0
3,332,498	-				+0.0
3,332,498	-				+0.0
3,332,543	-				+0.0
3,332,543	-				+0.0
3,332,547	+				-0.6
3,332,548	-				-2.2
3,332,548	-				-1.9
3,332,548	-				-2.1
3,332,615	-				+0.0
3,332,699	-		Pf1N1B4_2971	0.17	+0.0
3,332,699	-		Pf1N1B4_2971	0.17	+0.0
3,332,699	-		Pf1N1B4_2971	0.17	-2.5
3,332,786	-		Pf1N1B4_2971	0.34	+0.0
3,332,813	-		Pf1N1B4_2971	0.39	-3.2
3,332,813	-		Pf1N1B4_2971	0.39	+0.0
3,333,018	+		Pf1N1B4_2971	0.78	-4.4
3,333,018	+		Pf1N1B4_2971	0.78	+0.0
3,333,018	+		Pf1N1B4_2971	0.78	+0.0
3,333,018	+		Pf1N1B4_2971	0.78	-2.1
3,333,019	-		Pf1N1B4_2971	0.79	+0.0
3,333,019	-		Pf1N1B4_2971	0.79	+0.0
3,333,067	+		Pf1N1B4_2971	0.88	+0.0
3,333,067	+		Pf1N1B4_2971	0.88	+0.0
3,333,068	-		Pf1N1B4_2971	0.88	+0.0
3,333,091	+				+0.0
3,333,092	-				+0.9
3,333,168	+				+0.0
3,333,197	+				+0.0
3,333,197	+				-1.7
3,333,197	+				-2.2
3,333,198	-				+0.0
3,333,198	-				+0.0
3,333,300	+				+0.0
3,333,304	+				-2.7
3,333,305	-		Pf1N1B4_2972	0.10	+0.0
3,333,305	-		Pf1N1B4_2972	0.10	-1.1