Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2411

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B
2,730,061	+		Pf1N1B4_2410	0.66	-0.0
2,730,061	+		Pf1N1B4_2410	0.66	-0.0
2,730,245	-		Pf1N1B4_2410	0.74	-0.8
2,730,245	-		Pf1N1B4_2410	0.74	-1.8
2,730,245	-		Pf1N1B4_2410	0.74	-0.0
2,730,245	-		Pf1N1B4_2410	0.74	-0.0
2,730,245	-		Pf1N1B4_2410	0.74	-1.8
2,730,245	-		Pf1N1B4_2410	0.74	-0.0
2,730,422	-		Pf1N1B4_2410	0.82	-0.0
2,730,422	-		Pf1N1B4_2410	0.82	-1.2
2,730,522	-		Pf1N1B4_2410	0.87	-0.0
2,730,522	-		Pf1N1B4_2410	0.87	-0.0
2,730,838	+				-0.0
2,730,839	-				-0.0
2,730,851	+				-1.3
2,730,851	+				-0.0
2,730,917	-				-0.0
2,730,917	-				+0.7
2,730,958	-				-3.7
2,730,958	-				-4.1
2,731,017	+				-1.5
2,731,017	+				-0.0
2,731,017	+				-0.0
2,731,017	+				-3.0
2,731,018	-				-0.0
2,731,127	+				-0.0
2,731,128	-				-0.0
2,731,168	+		Pf1N1B4_2411	0.12	-0.0
2,731,169	-		Pf1N1B4_2411	0.12	-3.4
2,731,289	+		Pf1N1B4_2411	0.22	-0.0
2,731,290	-		Pf1N1B4_2411	0.22	-0.0
2,731,290	-				-2.8
2,731,980	-		Pf1N1B4_2411	0.81	-0.0
2,732,379	-				+0.0
2,732,434	+				+0.0
2,732,435	-				-1.8
2,732,435	-				+0.0
2,732,435	-				+0.0
2,732,527	-		Pf1N1B4_2412	0.13	-0.5
2,732,527	-		Pf1N1B4_2412	0.13	-0.5
2,732,527	-		Pf1N1B4_2412	0.13	+0.0
2,732,527	-		Pf1N1B4_2412	0.13	+0.0
2,732,792	+		Pf1N1B4_2412	0.33	+0.0
2,732,843	+				+0.0
2,732,844	-		Pf1N1B4_2412	0.36	-3.1
2,732,844	-		Pf1N1B4_2412	0.36	+0.0
2,732,869	-		Pf1N1B4_2412	0.38	+0.0
2,733,055	+		Pf1N1B4_2412	0.52	+0.0
2,733,055	+		Pf1N1B4_2412	0.52	+0.0
2,733,055	+		Pf1N1B4_2412	0.52	+0.0
2,733,056	-		Pf1N1B4_2412	0.52	+0.0