Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3307 and Dsui_3308 are separated by 139 nucleotides Dsui_3308 and Dsui_3309 are separated by 83 nucleotides
Dsui_3307: Dsui_3307 - cytochrome c553, at 3,549,288 to 3,550,019
_3307
Dsui_3308: Dsui_3308 - cytochrome c553, at 3,550,159 to 3,550,470
_3308
Dsui_3309: Dsui_3309 - nitrous oxide reductase, at 3,550,554 to 3,552,851
_3309
Position (kb)
3550
3551 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3549.183 kb on - strand at 3549.203 kb on + strand at 3549.209 kb on - strand at 3549.238 kb on - strand at 3549.277 kb on - strand at 3549.312 kb on - strand at 3549.312 kb on - strand at 3549.353 kb on - strand at 3549.360 kb on + strand at 3549.405 kb on + strand, within Dsui_3307 at 3549.431 kb on - strand, within Dsui_3307 at 3549.438 kb on + strand, within Dsui_3307 at 3549.490 kb on + strand, within Dsui_3307 at 3549.498 kb on - strand, within Dsui_3307 at 3549.498 kb on - strand, within Dsui_3307 at 3549.632 kb on - strand, within Dsui_3307 at 3549.692 kb on + strand at 3549.726 kb on + strand at 3549.754 kb on + strand, within Dsui_3307 at 3549.757 kb on - strand, within Dsui_3307 at 3549.759 kb on + strand, within Dsui_3307 at 3549.767 kb on - strand, within Dsui_3307 at 3549.841 kb on - strand, within Dsui_3307 at 3549.899 kb on + strand, within Dsui_3307 at 3549.949 kb on - strand at 3549.979 kb on - strand at 3549.979 kb on - strand at 3549.986 kb on + strand at 3550.000 kb on + strand at 3550.027 kb on + strand at 3550.027 kb on + strand at 3550.035 kb on - strand at 3550.035 kb on - strand at 3550.035 kb on - strand at 3550.051 kb on + strand at 3550.054 kb on - strand at 3550.059 kb on - strand at 3550.059 kb on - strand at 3550.059 kb on - strand at 3550.059 kb on - strand at 3550.170 kb on - strand at 3550.170 kb on - strand at 3550.171 kb on - strand at 3550.201 kb on - strand, within Dsui_3308 at 3550.302 kb on - strand, within Dsui_3308 at 3550.320 kb on + strand, within Dsui_3308 at 3550.353 kb on - strand, within Dsui_3308 at 3550.353 kb on - strand, within Dsui_3308 at 3550.363 kb on + strand at 3550.401 kb on - strand, within Dsui_3308 at 3550.527 kb on + strand at 3550.556 kb on + strand at 3550.588 kb on - strand at 3550.599 kb on - strand at 3551.175 kb on + strand, within Dsui_3309 at 3551.183 kb on - strand, within Dsui_3309 at 3551.250 kb on - strand, within Dsui_3309 at 3551.299 kb on + strand, within Dsui_3309 at 3551.302 kb on - strand, within Dsui_3309 at 3551.418 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 3,549,183 - -0.3 3,549,203 + -1.4 3,549,209 - +0.3 3,549,238 - -0.3 3,549,277 - +0.0 3,549,312 - +1.0 3,549,312 - +1.0 3,549,353 - -1.2 3,549,360 + +0.7 3,549,405 + Dsui_3307 0.16 -0.8 3,549,431 - Dsui_3307 0.20 -1.0 3,549,438 + Dsui_3307 0.20 +2.3 3,549,490 + Dsui_3307 0.28 -2.9 3,549,498 - Dsui_3307 0.29 +0.4 3,549,498 - Dsui_3307 0.29 -2.0 3,549,632 - Dsui_3307 0.47 +1.7 3,549,692 + +1.2 3,549,726 + -2.8 3,549,754 + Dsui_3307 0.64 -0.9 3,549,757 - Dsui_3307 0.64 -0.6 3,549,759 + Dsui_3307 0.64 -1.9 3,549,767 - Dsui_3307 0.65 -1.0 3,549,841 - Dsui_3307 0.76 -1.3 3,549,899 + Dsui_3307 0.83 -1.3 3,549,949 - -2.0 3,549,979 - -0.2 3,549,979 - -1.7 3,549,986 + -0.1 3,550,000 + +2.3 3,550,027 + -1.5 3,550,027 + -0.7 3,550,035 - -0.5 3,550,035 - -0.3 3,550,035 - -0.4 3,550,051 + -0.4 3,550,054 - +0.1 3,550,059 - -1.0 3,550,059 - +0.1 3,550,059 - -0.8 3,550,059 - -0.6 3,550,170 - -0.6 3,550,170 - +1.7 3,550,171 - -0.7 3,550,201 - Dsui_3308 0.13 -0.9 3,550,302 - Dsui_3308 0.46 -1.1 3,550,320 + Dsui_3308 0.52 -2.8 3,550,353 - Dsui_3308 0.62 -1.1 3,550,353 - Dsui_3308 0.62 -1.9 3,550,363 + +2.7 3,550,401 - Dsui_3308 0.78 -0.8 3,550,527 + +0.7 3,550,556 + -1.5 3,550,588 - -1.0 3,550,599 - -1.1 3,551,175 + Dsui_3309 0.27 +0.7 3,551,183 - Dsui_3309 0.27 -2.2 3,551,250 - Dsui_3309 0.30 -1.8 3,551,299 + Dsui_3309 0.32 -2.1 3,551,302 - Dsui_3309 0.33 -1.9 3,551,418 + +0.7
Or see this region's nucleotide sequence