Strain Fitness in Dechlorosoma suillum PS around Dsui_3308

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3307 and Dsui_3308 are separated by 139 nucleotidesDsui_3308 and Dsui_3309 are separated by 83 nucleotides Dsui_3307: Dsui_3307 - cytochrome c553, at 3,549,288 to 3,550,019 _3307 Dsui_3308: Dsui_3308 - cytochrome c553, at 3,550,159 to 3,550,470 _3308 Dsui_3309: Dsui_3309 - nitrous oxide reductase, at 3,550,554 to 3,552,851 _3309 Position (kb) 3550 3551Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3549.183 kb on - strandat 3549.203 kb on + strandat 3549.209 kb on - strandat 3549.238 kb on - strandat 3549.277 kb on - strandat 3549.312 kb on - strandat 3549.312 kb on - strandat 3549.353 kb on - strandat 3549.360 kb on + strandat 3549.405 kb on + strand, within Dsui_3307at 3549.431 kb on - strand, within Dsui_3307at 3549.438 kb on + strand, within Dsui_3307at 3549.490 kb on + strand, within Dsui_3307at 3549.498 kb on - strand, within Dsui_3307at 3549.498 kb on - strand, within Dsui_3307at 3549.632 kb on - strand, within Dsui_3307at 3549.692 kb on + strandat 3549.726 kb on + strandat 3549.754 kb on + strand, within Dsui_3307at 3549.757 kb on - strand, within Dsui_3307at 3549.759 kb on + strand, within Dsui_3307at 3549.767 kb on - strand, within Dsui_3307at 3549.841 kb on - strand, within Dsui_3307at 3549.899 kb on + strand, within Dsui_3307at 3549.949 kb on - strandat 3549.979 kb on - strandat 3549.979 kb on - strandat 3549.986 kb on + strandat 3550.000 kb on + strandat 3550.027 kb on + strandat 3550.027 kb on + strandat 3550.035 kb on - strandat 3550.035 kb on - strandat 3550.035 kb on - strandat 3550.051 kb on + strandat 3550.054 kb on - strandat 3550.059 kb on - strandat 3550.059 kb on - strandat 3550.059 kb on - strandat 3550.059 kb on - strandat 3550.170 kb on - strandat 3550.170 kb on - strandat 3550.171 kb on - strandat 3550.201 kb on - strand, within Dsui_3308at 3550.302 kb on - strand, within Dsui_3308at 3550.320 kb on + strand, within Dsui_3308at 3550.353 kb on - strand, within Dsui_3308at 3550.353 kb on - strand, within Dsui_3308at 3550.363 kb on + strandat 3550.401 kb on - strand, within Dsui_3308at 3550.527 kb on + strandat 3550.556 kb on + strandat 3550.588 kb on - strandat 3550.599 kb on - strandat 3551.175 kb on + strand, within Dsui_3309at 3551.183 kb on - strand, within Dsui_3309at 3551.250 kb on - strand, within Dsui_3309at 3551.299 kb on + strand, within Dsui_3309at 3551.302 kb on - strand, within Dsui_3309at 3551.418 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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3,549,183 - -0.3
3,549,203 + -1.4
3,549,209 - +0.3
3,549,238 - -0.3
3,549,277 - +0.0
3,549,312 - +1.0
3,549,312 - +1.0
3,549,353 - -1.2
3,549,360 + +0.7
3,549,405 + Dsui_3307 0.16 -0.8
3,549,431 - Dsui_3307 0.20 -1.0
3,549,438 + Dsui_3307 0.20 +2.3
3,549,490 + Dsui_3307 0.28 -2.9
3,549,498 - Dsui_3307 0.29 +0.4
3,549,498 - Dsui_3307 0.29 -2.0
3,549,632 - Dsui_3307 0.47 +1.7
3,549,692 + +1.2
3,549,726 + -2.8
3,549,754 + Dsui_3307 0.64 -0.9
3,549,757 - Dsui_3307 0.64 -0.6
3,549,759 + Dsui_3307 0.64 -1.9
3,549,767 - Dsui_3307 0.65 -1.0
3,549,841 - Dsui_3307 0.76 -1.3
3,549,899 + Dsui_3307 0.83 -1.3
3,549,949 - -2.0
3,549,979 - -0.2
3,549,979 - -1.7
3,549,986 + -0.1
3,550,000 + +2.3
3,550,027 + -1.5
3,550,027 + -0.7
3,550,035 - -0.5
3,550,035 - -0.3
3,550,035 - -0.4
3,550,051 + -0.4
3,550,054 - +0.1
3,550,059 - -1.0
3,550,059 - +0.1
3,550,059 - -0.8
3,550,059 - -0.6
3,550,170 - -0.6
3,550,170 - +1.7
3,550,171 - -0.7
3,550,201 - Dsui_3308 0.13 -0.9
3,550,302 - Dsui_3308 0.46 -1.1
3,550,320 + Dsui_3308 0.52 -2.8
3,550,353 - Dsui_3308 0.62 -1.1
3,550,353 - Dsui_3308 0.62 -1.9
3,550,363 + +2.7
3,550,401 - Dsui_3308 0.78 -0.8
3,550,527 + +0.7
3,550,556 + -1.5
3,550,588 - -1.0
3,550,599 - -1.1
3,551,175 + Dsui_3309 0.27 +0.7
3,551,183 - Dsui_3309 0.27 -2.2
3,551,250 - Dsui_3309 0.30 -1.8
3,551,299 + Dsui_3309 0.32 -2.1
3,551,302 - Dsui_3309 0.33 -1.9
3,551,418 + +0.7

Or see this region's nucleotide sequence