Strain Fitness in Dechlorosoma suillum PS around Dsui_3292

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3290 and Dsui_3291 overlap by 4 nucleotidesDsui_3291 and Dsui_3292 are separated by 93 nucleotidesDsui_3292 and Dsui_3293 overlap by 62 nucleotidesDsui_3293 and Dsui_3294 are separated by 1 nucleotides Dsui_3290: Dsui_3290 - 4-hydroxybenzoate synthetase (chorismate lyase), at 3,531,626 to 3,532,171 _3290 Dsui_3291: Dsui_3291 - hypothetical protein, at 3,532,168 to 3,532,626 _3291 Dsui_3292: Dsui_3292 - hypothetical protein, at 3,532,720 to 3,532,878 _3292 Dsui_3293: Dsui_3293 - pseudouridine synthase family protein, at 3,532,817 to 3,533,482 _3293 Dsui_3294: Dsui_3294 - isocitrate dehydrogenase kinase/phosphatase, at 3,533,484 to 3,535,331 _3294 Position (kb) 3532 3533Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3531.769 kb on + strandat 3531.898 kb on - strand, within Dsui_3290at 3531.959 kb on - strand, within Dsui_3290at 3531.984 kb on - strand, within Dsui_3290at 3531.991 kb on + strand, within Dsui_3290at 3532.195 kb on - strandat 3532.203 kb on + strandat 3532.203 kb on + strandat 3532.306 kb on - strand, within Dsui_3291at 3532.484 kb on + strand, within Dsui_3291at 3532.492 kb on - strand, within Dsui_3291at 3532.492 kb on - strand, within Dsui_3291at 3532.527 kb on + strandat 3532.672 kb on - strandat 3532.674 kb on + strandat 3532.682 kb on - strandat 3532.848 kb on + strandat 3532.848 kb on + strandat 3532.856 kb on - strandat 3532.856 kb on - strandat 3533.028 kb on - strand, within Dsui_3293at 3533.033 kb on - strand, within Dsui_3293at 3533.128 kb on - strand, within Dsui_3293at 3533.169 kb on - strandat 3533.174 kb on - strand, within Dsui_3293at 3533.179 kb on - strand, within Dsui_3293at 3533.250 kb on + strand, within Dsui_3293at 3533.250 kb on + strand, within Dsui_3293at 3533.258 kb on - strand, within Dsui_3293at 3533.299 kb on - strand, within Dsui_3293at 3533.349 kb on - strand, within Dsui_3293at 3533.378 kb on - strand, within Dsui_3293at 3533.389 kb on + strandat 3533.389 kb on + strandat 3533.448 kb on + strandat 3533.531 kb on + strandat 3533.539 kb on - strandat 3533.620 kb on - strandat 3533.642 kb on - strandat 3533.743 kb on - strand, within Dsui_3294at 3533.758 kb on - strand, within Dsui_3294at 3533.860 kb on - strand, within Dsui_3294

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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3,531,769 + +3.7
3,531,898 - Dsui_3290 0.50 -0.5
3,531,959 - Dsui_3290 0.61 -0.6
3,531,984 - Dsui_3290 0.66 +3.0
3,531,991 + Dsui_3290 0.67 +0.0
3,532,195 - +0.1
3,532,203 + +0.7
3,532,203 + +2.7
3,532,306 - Dsui_3291 0.30 -0.3
3,532,484 + Dsui_3291 0.69 +0.7
3,532,492 - Dsui_3291 0.71 -0.5
3,532,492 - Dsui_3291 0.71 +1.7
3,532,527 + -1.8
3,532,672 - +3.3
3,532,674 + -0.7
3,532,682 - +1.3
3,532,848 + +2.3
3,532,848 + +0.3
3,532,856 - +0.3
3,532,856 - +3.7
3,533,028 - Dsui_3293 0.32 +0.2
3,533,033 - Dsui_3293 0.32 -0.8
3,533,128 - Dsui_3293 0.47 +3.7
3,533,169 - -0.1
3,533,174 - Dsui_3293 0.54 +3.3
3,533,179 - Dsui_3293 0.54 -1.2
3,533,250 + Dsui_3293 0.65 -0.9
3,533,250 + Dsui_3293 0.65 -2.1
3,533,258 - Dsui_3293 0.66 +0.7
3,533,299 - Dsui_3293 0.72 -1.0
3,533,349 - Dsui_3293 0.80 -0.9
3,533,378 - Dsui_3293 0.84 -1.3
3,533,389 + +0.1
3,533,389 + +3.1
3,533,448 + +0.7
3,533,531 + -2.1
3,533,539 - -0.3
3,533,620 - -0.8
3,533,642 - +1.7
3,533,743 - Dsui_3294 0.14 -0.3
3,533,758 - Dsui_3294 0.15 -0.7
3,533,860 - Dsui_3294 0.20 -1.8

Or see this region's nucleotide sequence