Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3126 and Dsui_3127 are separated by 201 nucleotides Dsui_3127 and Dsui_3128 are separated by 16 nucleotides Dsui_3128 and Dsui_3129 are separated by 40 nucleotides Dsui_3129 and Dsui_3130 are separated by 244 nucleotides Dsui_3130 and Dsui_3131 are separated by 269 nucleotides
Dsui_3126: Dsui_3126 - heme d1 biosynthesis radical SAM protein NirJ, at 3,348,006 to 3,349,169
_3126
Dsui_3127: Dsui_3127 - 23S RNA-specific pseudouridylate synthase, at 3,349,371 to 3,350,117
_3127
Dsui_3128: Dsui_3128 - ribonuclease R, at 3,350,134 to 3,352,620
_3128
Dsui_3129: Dsui_3129 - tRNA-Leu, at 3,352,661 to 3,352,747
_3129
Dsui_3130: Dsui_3130 - tRNA-Leu, at 3,352,992 to 3,353,078
_3130
Dsui_3131: Dsui_3131 - adenylosuccinate synthase, at 3,353,348 to 3,354,658
_3131
Position (kb)
3350
3351
3352
3353 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3349.177 kb on + strand at 3349.234 kb on + strand at 3349.234 kb on + strand at 3349.245 kb on - strand at 3349.252 kb on - strand at 3349.336 kb on - strand at 3349.341 kb on + strand at 3349.616 kb on + strand, within Dsui_3127 at 3349.621 kb on + strand, within Dsui_3127 at 3349.778 kb on - strand at 3350.016 kb on - strand, within Dsui_3127 at 3350.065 kb on - strand at 3350.080 kb on - strand at 3350.468 kb on + strand, within Dsui_3128 at 3350.562 kb on + strand, within Dsui_3128 at 3350.589 kb on + strand, within Dsui_3128 at 3350.626 kb on + strand, within Dsui_3128 at 3350.776 kb on - strand, within Dsui_3128 at 3350.853 kb on + strand, within Dsui_3128 at 3350.853 kb on + strand at 3350.861 kb on - strand, within Dsui_3128 at 3350.895 kb on - strand at 3350.896 kb on - strand, within Dsui_3128 at 3350.954 kb on - strand, within Dsui_3128 at 3350.961 kb on + strand, within Dsui_3128 at 3350.969 kb on - strand, within Dsui_3128 at 3350.996 kb on + strand at 3351.003 kb on - strand, within Dsui_3128 at 3351.004 kb on - strand, within Dsui_3128 at 3351.028 kb on - strand at 3351.032 kb on + strand, within Dsui_3128 at 3351.144 kb on + strand at 3351.207 kb on + strand at 3351.256 kb on - strand, within Dsui_3128 at 3351.352 kb on + strand, within Dsui_3128 at 3351.360 kb on + strand, within Dsui_3128 at 3351.360 kb on - strand, within Dsui_3128 at 3351.372 kb on - strand, within Dsui_3128 at 3351.444 kb on + strand, within Dsui_3128 at 3351.452 kb on - strand, within Dsui_3128 at 3351.468 kb on + strand, within Dsui_3128 at 3351.499 kb on - strand, within Dsui_3128 at 3351.590 kb on + strand, within Dsui_3128 at 3351.622 kb on + strand, within Dsui_3128 at 3351.636 kb on - strand, within Dsui_3128 at 3351.643 kb on + strand, within Dsui_3128 at 3351.643 kb on + strand at 3351.643 kb on + strand, within Dsui_3128 at 3351.651 kb on - strand, within Dsui_3128 at 3351.657 kb on - strand, within Dsui_3128 at 3351.753 kb on - strand, within Dsui_3128 at 3351.778 kb on + strand, within Dsui_3128 at 3351.817 kb on + strand, within Dsui_3128 at 3351.817 kb on + strand at 3351.834 kb on + strand, within Dsui_3128 at 3351.963 kb on + strand, within Dsui_3128 at 3352.022 kb on + strand, within Dsui_3128 at 3352.030 kb on - strand, within Dsui_3128 at 3352.070 kb on - strand, within Dsui_3128 at 3352.130 kb on - strand, within Dsui_3128 at 3352.151 kb on - strand, within Dsui_3128 at 3352.201 kb on + strand at 3352.257 kb on + strand, within Dsui_3128 at 3352.324 kb on + strand, within Dsui_3128 at 3352.325 kb on + strand, within Dsui_3128 at 3352.331 kb on + strand, within Dsui_3128 at 3352.332 kb on - strand, within Dsui_3128 at 3352.332 kb on - strand, within Dsui_3128 at 3352.415 kb on - strand at 3352.438 kb on + strand at 3352.958 kb on - strand at 3353.061 kb on + strand, within Dsui_3130 at 3353.232 kb on + strand at 3353.269 kb on + strand at 3353.269 kb on + strand at 3353.277 kb on - strand at 3353.277 kb on - strand at 3353.277 kb on - strand at 3353.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 3,349,177 + +0.1 3,349,234 + -1.9 3,349,234 + +0.6 3,349,245 - +2.2 3,349,252 - +0.6 3,349,336 - -0.0 3,349,341 + +0.6 3,349,616 + Dsui_3127 0.33 +0.4 3,349,621 + Dsui_3127 0.33 -0.4 3,349,778 - +0.6 3,350,016 - Dsui_3127 0.86 -0.0 3,350,065 - -0.8 3,350,080 - +0.1 3,350,468 + Dsui_3128 0.13 +3.2 3,350,562 + Dsui_3128 0.17 +0.9 3,350,589 + Dsui_3128 0.18 +0.5 3,350,626 + Dsui_3128 0.20 -0.8 3,350,776 - Dsui_3128 0.26 -0.2 3,350,853 + Dsui_3128 0.29 +1.2 3,350,853 + +0.1 3,350,861 - Dsui_3128 0.29 -0.6 3,350,895 - +2.2 3,350,896 - Dsui_3128 0.31 -0.7 3,350,954 - Dsui_3128 0.33 -0.5 3,350,961 + Dsui_3128 0.33 +2.6 3,350,969 - Dsui_3128 0.34 +0.1 3,350,996 + -0.9 3,351,003 - Dsui_3128 0.35 +0.9 3,351,004 - Dsui_3128 0.35 +0.0 3,351,028 - +2.6 3,351,032 + Dsui_3128 0.36 +0.1 3,351,144 + +2.6 3,351,207 + +0.6 3,351,256 - Dsui_3128 0.45 -0.4 3,351,352 + Dsui_3128 0.49 +1.0 3,351,360 + Dsui_3128 0.49 +2.2 3,351,360 - Dsui_3128 0.49 +0.1 3,351,372 - Dsui_3128 0.50 +1.6 3,351,444 + Dsui_3128 0.53 +1.4 3,351,452 - Dsui_3128 0.53 +0.1 3,351,468 + Dsui_3128 0.54 -0.1 3,351,499 - Dsui_3128 0.55 +0.7 3,351,590 + Dsui_3128 0.59 -0.1 3,351,622 + Dsui_3128 0.60 -1.4 3,351,636 - Dsui_3128 0.60 +0.4 3,351,643 + Dsui_3128 0.61 +1.3 3,351,643 + -0.8 3,351,643 + Dsui_3128 0.61 -0.4 3,351,651 - Dsui_3128 0.61 +2.6 3,351,657 - Dsui_3128 0.61 -1.8 3,351,753 - Dsui_3128 0.65 -1.2 3,351,778 + Dsui_3128 0.66 -0.5 3,351,817 + Dsui_3128 0.68 +3.0 3,351,817 + +3.6 3,351,834 + Dsui_3128 0.68 -0.8 3,351,963 + Dsui_3128 0.74 +1.9 3,352,022 + Dsui_3128 0.76 -0.4 3,352,030 - Dsui_3128 0.76 +2.0 3,352,070 - Dsui_3128 0.78 -0.8 3,352,130 - Dsui_3128 0.80 -0.2 3,352,151 - Dsui_3128 0.81 +2.6 3,352,201 + +0.6 3,352,257 + Dsui_3128 0.85 -2.2 3,352,324 + Dsui_3128 0.88 -0.1 3,352,325 + Dsui_3128 0.88 +0.4 3,352,331 + Dsui_3128 0.88 +0.5 3,352,332 - Dsui_3128 0.88 +3.2 3,352,332 - Dsui_3128 0.88 +0.2 3,352,415 - +0.5 3,352,438 + -0.6 3,352,958 - -0.2 3,353,061 + Dsui_3130 0.79 +1.4 3,353,232 + -0.1 3,353,269 + -0.9 3,353,269 + -1.4 3,353,277 - -0.4 3,353,277 - -1.6 3,353,277 - -0.3 3,353,339 - -0.1
Or see this region's nucleotide sequence