Strain Fitness in Dechlorosoma suillum PS around Dsui_3096

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3094 and Dsui_3095 are separated by 82 nucleotidesDsui_3095 and Dsui_3096 are separated by 121 nucleotidesDsui_3096 and Dsui_3097 are separated by 196 nucleotides Dsui_3094: Dsui_3094 - putative HD superfamily hydrolase, at 3,312,476 to 3,313,132 _3094 Dsui_3095: Dsui_3095 - Protein of unknown function (DUF2726), at 3,313,215 to 3,313,691 _3095 Dsui_3096: Dsui_3096 - NADH dehydrogenase, FAD-containing subunit, at 3,313,813 to 3,315,132 _3096 Dsui_3097: Dsui_3097 - O-6-methylguanine DNA methyltransferase, at 3,315,329 to 3,316,552 _3097 Position (kb) 3313 3314 3315 3316Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3312.932 kb on - strand, within Dsui_3094at 3313.001 kb on + strand, within Dsui_3094at 3313.085 kb on + strandat 3313.150 kb on - strandat 3313.150 kb on - strandat 3313.164 kb on + strandat 3313.222 kb on + strandat 3313.304 kb on + strandat 3313.391 kb on - strandat 3313.484 kb on - strand, within Dsui_3095at 3313.502 kb on + strand, within Dsui_3095at 3313.563 kb on - strand, within Dsui_3095at 3313.563 kb on - strand, within Dsui_3095at 3313.563 kb on - strand, within Dsui_3095at 3313.574 kb on - strand, within Dsui_3095at 3313.700 kb on + strandat 3313.848 kb on + strandat 3313.856 kb on - strandat 3313.919 kb on - strandat 3313.969 kb on - strand, within Dsui_3096at 3314.090 kb on + strandat 3314.229 kb on - strand, within Dsui_3096at 3314.297 kb on + strandat 3314.357 kb on + strandat 3314.415 kb on - strandat 3314.428 kb on - strandat 3314.502 kb on - strandat 3314.519 kb on - strand, within Dsui_3096at 3314.520 kb on - strand, within Dsui_3096at 3314.533 kb on + strandat 3314.652 kb on - strand, within Dsui_3096at 3314.658 kb on - strand, within Dsui_3096at 3314.720 kb on + strandat 3314.768 kb on + strand, within Dsui_3096at 3314.862 kb on - strand, within Dsui_3096at 3315.506 kb on + strand, within Dsui_3097at 3315.531 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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3,312,932 - Dsui_3094 0.69 +0.9
3,313,001 + Dsui_3094 0.80 -0.3
3,313,085 + -0.4
3,313,150 - -0.9
3,313,150 - +0.2
3,313,164 + -0.5
3,313,222 + +0.6
3,313,304 + +2.6
3,313,391 - -1.2
3,313,484 - Dsui_3095 0.56 +2.2
3,313,502 + Dsui_3095 0.60 -0.4
3,313,563 - Dsui_3095 0.73 +0.8
3,313,563 - Dsui_3095 0.73 +0.3
3,313,563 - Dsui_3095 0.73 +0.1
3,313,574 - Dsui_3095 0.75 -0.3
3,313,700 + +1.6
3,313,848 + -1.4
3,313,856 - -1.4
3,313,919 - +1.6
3,313,969 - Dsui_3096 0.12 +0.1
3,314,090 + +0.6
3,314,229 - Dsui_3096 0.32 -2.1
3,314,297 + +2.2
3,314,357 + -2.8
3,314,415 - +0.6
3,314,428 - -1.5
3,314,502 - +0.6
3,314,519 - Dsui_3096 0.53 -0.3
3,314,520 - Dsui_3096 0.54 -2.4
3,314,533 + +2.2
3,314,652 - Dsui_3096 0.64 -0.8
3,314,658 - Dsui_3096 0.64 -0.2
3,314,720 + +0.6
3,314,768 + Dsui_3096 0.72 -0.4
3,314,862 - Dsui_3096 0.79 -1.1
3,315,506 + Dsui_3097 0.14 -0.9
3,315,531 + -1.0

Or see this region's nucleotide sequence