Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2817 and Dsui_2818 overlap by 1 nucleotides Dsui_2818 and Dsui_2819 overlap by 31 nucleotides Dsui_2819 and Dsui_2820 are separated by 1 nucleotides
Dsui_2817: Dsui_2817 - DMT(drug/metabolite transporter) superfamily permease, at 2,993,904 to 2,994,830
_2817
Dsui_2818: Dsui_2818 - hypothetical protein, at 2,994,830 to 2,995,630
_2818
Dsui_2819: Dsui_2819 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,995,600 to 2,996,373
_2819
Dsui_2820: Dsui_2820 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,996,375 to 2,997,280
_2820
Position (kb)
2994
2995
2996 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2993.876 kb on + strand at 2993.876 kb on + strand at 2993.901 kb on + strand at 2993.929 kb on - strand at 2993.982 kb on + strand at 2994.072 kb on + strand, within Dsui_2817 at 2994.180 kb on + strand, within Dsui_2817 at 2994.180 kb on + strand, within Dsui_2817 at 2994.183 kb on + strand, within Dsui_2817 at 2994.185 kb on + strand, within Dsui_2817 at 2994.193 kb on - strand, within Dsui_2817 at 2994.315 kb on - strand at 2994.358 kb on + strand, within Dsui_2817 at 2994.413 kb on - strand at 2994.740 kb on + strand at 2994.784 kb on + strand at 2994.789 kb on + strand at 2994.859 kb on + strand at 2994.870 kb on + strand at 2995.031 kb on + strand, within Dsui_2818 at 2995.039 kb on - strand, within Dsui_2818 at 2995.145 kb on + strand, within Dsui_2818 at 2995.164 kb on - strand, within Dsui_2818 at 2995.290 kb on + strand at 2995.297 kb on - strand, within Dsui_2818 at 2995.310 kb on + strand, within Dsui_2818 at 2995.464 kb on - strand, within Dsui_2818 at 2995.519 kb on + strand, within Dsui_2818 at 2995.527 kb on - strand, within Dsui_2818 at 2995.562 kb on - strand at 2995.694 kb on + strand, within Dsui_2819 at 2995.821 kb on - strand, within Dsui_2819 at 2995.958 kb on - strand, within Dsui_2819 at 2995.984 kb on + strand, within Dsui_2819 at 2996.125 kb on + strand at 2996.232 kb on + strand, within Dsui_2819 at 2996.272 kb on + strand, within Dsui_2819 at 2996.272 kb on + strand at 2996.272 kb on + strand, within Dsui_2819 at 2996.321 kb on + strand at 2996.364 kb on - strand at 2996.436 kb on - strand at 2996.476 kb on - strand, within Dsui_2820
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 2,993,876 + +2.6 2,993,876 + +3.3 2,993,901 + -0.2 2,993,929 - +0.6 2,993,982 + -0.7 2,994,072 + Dsui_2817 0.18 -0.5 2,994,180 + Dsui_2817 0.30 -2.1 2,994,180 + Dsui_2817 0.30 -0.3 2,994,183 + Dsui_2817 0.30 +2.2 2,994,185 + Dsui_2817 0.30 +0.9 2,994,193 - Dsui_2817 0.31 +1.6 2,994,315 - +2.2 2,994,358 + Dsui_2817 0.49 +0.6 2,994,413 - +0.6 2,994,740 + +1.5 2,994,784 + -0.7 2,994,789 + +1.2 2,994,859 + -3.1 2,994,870 + -0.4 2,995,031 + Dsui_2818 0.25 +3.5 2,995,039 - Dsui_2818 0.26 +0.6 2,995,145 + Dsui_2818 0.39 +2.6 2,995,164 - Dsui_2818 0.42 +0.1 2,995,290 + -0.9 2,995,297 - Dsui_2818 0.58 +3.5 2,995,310 + Dsui_2818 0.60 +1.6 2,995,464 - Dsui_2818 0.79 +1.6 2,995,519 + Dsui_2818 0.86 +1.2 2,995,527 - Dsui_2818 0.87 -2.5 2,995,562 - -1.4 2,995,694 + Dsui_2819 0.12 +0.3 2,995,821 - Dsui_2819 0.29 -1.0 2,995,958 - Dsui_2819 0.46 +0.2 2,995,984 + Dsui_2819 0.50 -0.9 2,996,125 + +0.6 2,996,232 + Dsui_2819 0.82 -0.7 2,996,272 + Dsui_2819 0.87 +3.5 2,996,272 + -0.4 2,996,272 + Dsui_2819 0.87 +0.6 2,996,321 + +0.6 2,996,364 - -0.9 2,996,436 - +2.6 2,996,476 - Dsui_2820 0.11 -1.1
Or see this region's nucleotide sequence