Strain Fitness in Dechlorosoma suillum PS around Dsui_2761

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2759 and Dsui_2760 are separated by 349 nucleotidesDsui_2760 and Dsui_2761 are separated by 97 nucleotidesDsui_2761 and Dsui_2762 are separated by 162 nucleotidesDsui_2762 and Dsui_2763 are separated by 64 nucleotides Dsui_2759: Dsui_2759 - pseudouridine synthase family protein, at 2,918,917 to 2,920,515 _2759 Dsui_2760: Dsui_2760 - translation initiation factor IF-1, at 2,920,865 to 2,921,125 _2760 Dsui_2761: Dsui_2761 - hypothetical protein, at 2,921,223 to 2,921,387 _2761 Dsui_2762: Dsui_2762 - Protein of unknown function (DUF3617), at 2,921,550 to 2,922,095 _2762 Dsui_2763: Dsui_2763 - ribosome biogenesis GTP-binding protein YlqF, at 2,922,160 to 2,923,074 _2763 Position (kb) 2921 2922Strain fitness (log2 ratio) -2 -1 0 1 2at 2920.235 kb on - strandat 2920.250 kb on - strandat 2920.278 kb on + strand, within Dsui_2759at 2920.286 kb on - strandat 2920.569 kb on + strandat 2920.606 kb on + strandat 2920.730 kb on + strandat 2921.200 kb on + strandat 2921.208 kb on - strandat 2921.369 kb on + strand, within Dsui_2761at 2921.498 kb on + strandat 2921.560 kb on - strandat 2921.584 kb on - strandat 2921.598 kb on - strandat 2921.854 kb on + strand, within Dsui_2762at 2921.896 kb on - strandat 2922.036 kb on - strand, within Dsui_2762at 2922.097 kb on - strandat 2922.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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2,920,235 - +0.7
2,920,250 - -2.6
2,920,278 + Dsui_2759 0.85 -0.9
2,920,286 - -0.3
2,920,569 + -0.2
2,920,606 + -0.7
2,920,730 + +1.1
2,921,200 + +0.7
2,921,208 - -0.3
2,921,369 + Dsui_2761 0.88 -1.4
2,921,498 + -1.1
2,921,560 - +2.0
2,921,584 - +0.7
2,921,598 - +0.1
2,921,854 + Dsui_2762 0.56 -0.6
2,921,896 - +0.7
2,922,036 - Dsui_2762 0.89 -1.2
2,922,097 - -0.9
2,922,235 + -1.4

Or see this region's nucleotide sequence