Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2759 and Dsui_2760 are separated by 349 nucleotides Dsui_2760 and Dsui_2761 are separated by 97 nucleotides Dsui_2761 and Dsui_2762 are separated by 162 nucleotides Dsui_2762 and Dsui_2763 are separated by 64 nucleotides
Dsui_2759: Dsui_2759 - pseudouridine synthase family protein, at 2,918,917 to 2,920,515
_2759
Dsui_2760: Dsui_2760 - translation initiation factor IF-1, at 2,920,865 to 2,921,125
_2760
Dsui_2761: Dsui_2761 - hypothetical protein, at 2,921,223 to 2,921,387
_2761
Dsui_2762: Dsui_2762 - Protein of unknown function (DUF3617), at 2,921,550 to 2,922,095
_2762
Dsui_2763: Dsui_2763 - ribosome biogenesis GTP-binding protein YlqF, at 2,922,160 to 2,923,074
_2763
Position (kb)
2921
2922 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2920.235 kb on - strand at 2920.250 kb on - strand at 2920.278 kb on + strand, within Dsui_2759 at 2920.286 kb on - strand at 2920.569 kb on + strand at 2920.606 kb on + strand at 2920.730 kb on + strand at 2921.200 kb on + strand at 2921.208 kb on - strand at 2921.369 kb on + strand, within Dsui_2761 at 2921.498 kb on + strand at 2921.560 kb on - strand at 2921.584 kb on - strand at 2921.598 kb on - strand at 2921.854 kb on + strand, within Dsui_2762 at 2921.896 kb on - strand at 2922.036 kb on - strand, within Dsui_2762 at 2922.097 kb on - strand at 2922.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 2,920,235 - +0.7 2,920,250 - -2.6 2,920,278 + Dsui_2759 0.85 -0.9 2,920,286 - -0.3 2,920,569 + -0.2 2,920,606 + -0.7 2,920,730 + +1.1 2,921,200 + +0.7 2,921,208 - -0.3 2,921,369 + Dsui_2761 0.88 -1.4 2,921,498 + -1.1 2,921,560 - +2.0 2,921,584 - +0.7 2,921,598 - +0.1 2,921,854 + Dsui_2762 0.56 -0.6 2,921,896 - +0.7 2,922,036 - Dsui_2762 0.89 -1.2 2,922,097 - -0.9 2,922,235 + -1.4
Or see this region's nucleotide sequence