Strain Fitness in Dechlorosoma suillum PS around Dsui_2674

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2671 and Dsui_2672 are separated by 211 nucleotidesDsui_2672 and Dsui_2673 are separated by 50 nucleotidesDsui_2673 and Dsui_2674 overlap by 8 nucleotidesDsui_2674 and Dsui_2675 are separated by 60 nucleotidesDsui_2675 and Dsui_2676 overlap by 1 nucleotides Dsui_2671: Dsui_2671 - inosine-5''-monophosphate dehydrogenase, at 2,824,074 to 2,825,534 _2671 Dsui_2672: Dsui_2672 - hypothetical protein, at 2,825,746 to 2,826,096 _2672 Dsui_2673: Dsui_2673 - hypothetical protein, at 2,826,147 to 2,826,470 _2673 Dsui_2674: Dsui_2674 - oligoketide cyclase/lipid transport protein, at 2,826,463 to 2,826,894 _2674 Dsui_2675: Dsui_2675 - SsrA-binding protein, at 2,826,955 to 2,827,401 _2675 Dsui_2676: Dsui_2676 - putative membrane protein, at 2,827,401 to 2,828,021 _2676 Position (kb) 2826 2827Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2825.570 kb on + strandat 2825.575 kb on + strandat 2825.583 kb on - strandat 2825.583 kb on - strandat 2825.652 kb on - strandat 2825.676 kb on - strandat 2825.735 kb on + strandat 2825.758 kb on + strandat 2825.761 kb on + strandat 2825.764 kb on - strandat 2825.771 kb on + strandat 2825.803 kb on + strand, within Dsui_2672at 2825.806 kb on + strand, within Dsui_2672at 2825.815 kb on + strand, within Dsui_2672at 2825.823 kb on - strand, within Dsui_2672at 2825.830 kb on + strand, within Dsui_2672at 2825.830 kb on + strand, within Dsui_2672at 2825.837 kb on + strand, within Dsui_2672at 2825.894 kb on - strand, within Dsui_2672at 2825.937 kb on + strand, within Dsui_2672at 2825.969 kb on + strand, within Dsui_2672at 2826.065 kb on - strandat 2826.091 kb on + strandat 2826.096 kb on - strandat 2826.102 kb on + strandat 2826.115 kb on - strandat 2826.115 kb on - strandat 2826.115 kb on - strandat 2826.115 kb on - strandat 2826.130 kb on + strandat 2826.139 kb on - strandat 2826.228 kb on - strand, within Dsui_2673at 2826.294 kb on - strand, within Dsui_2673at 2826.365 kb on - strand, within Dsui_2673at 2826.409 kb on - strand, within Dsui_2673at 2826.897 kb on - strandat 2826.897 kb on - strandat 2826.980 kb on - strandat 2827.403 kb on - strandat 2827.426 kb on - strandat 2827.429 kb on - strandat 2827.439 kb on - strandat 2827.530 kb on + strand, within Dsui_2676at 2827.598 kb on - strand, within Dsui_2676at 2827.612 kb on - strand, within Dsui_2676

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
remove
2,825,570 + +0.8
2,825,575 + -0.5
2,825,583 - +2.0
2,825,583 - +0.8
2,825,652 - +1.8
2,825,676 - +2.4
2,825,735 + +0.7
2,825,758 + -1.6
2,825,761 + -0.9
2,825,764 - +0.0
2,825,771 + -0.7
2,825,803 + Dsui_2672 0.16 +0.0
2,825,806 + Dsui_2672 0.17 -1.2
2,825,815 + Dsui_2672 0.20 -0.9
2,825,823 - Dsui_2672 0.22 -0.4
2,825,830 + Dsui_2672 0.24 -0.3
2,825,830 + Dsui_2672 0.24 +0.3
2,825,837 + Dsui_2672 0.26 +0.6
2,825,894 - Dsui_2672 0.42 -2.9
2,825,937 + Dsui_2672 0.54 +0.8
2,825,969 + Dsui_2672 0.64 -0.7
2,826,065 - +1.8
2,826,091 + -0.2
2,826,096 - +0.0
2,826,102 + -0.6
2,826,115 - -0.1
2,826,115 - -1.0
2,826,115 - -0.7
2,826,115 - +0.2
2,826,130 + +0.0
2,826,139 - -0.2
2,826,228 - Dsui_2673 0.25 -0.5
2,826,294 - Dsui_2673 0.45 +0.8
2,826,365 - Dsui_2673 0.67 +0.8
2,826,409 - Dsui_2673 0.81 +1.8
2,826,897 - +0.0
2,826,897 - -0.9
2,826,980 - +0.8
2,827,403 - +0.4
2,827,426 - -0.2
2,827,429 - +3.2
2,827,439 - +0.3
2,827,530 + Dsui_2676 0.21 +0.8
2,827,598 - Dsui_2676 0.32 -2.4
2,827,612 - Dsui_2676 0.34 -0.5

Or see this region's nucleotide sequence