Strain Fitness in Dechlorosoma suillum PS around Dsui_2113

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2111 and Dsui_2112 overlap by 26 nucleotidesDsui_2112 and Dsui_2113 are separated by 61 nucleotidesDsui_2113 and Dsui_2114 are separated by 2 nucleotidesDsui_2114 and Dsui_2115 are separated by 280 nucleotides Dsui_2111: Dsui_2111 - cysteine desulfurase-like protein, SufS subfamily, at 2,235,829 to 2,237,721 _2111 Dsui_2112: Dsui_2112 - hypothetical protein, at 2,237,696 to 2,238,631 _2112 Dsui_2113: Dsui_2113 - serine acetyltransferase, at 2,238,693 to 2,239,691 _2113 Dsui_2114: Dsui_2114 - Rhodanese-related sulfurtransferase, at 2,239,694 to 2,240,236 _2114 Dsui_2115: Dsui_2115 - transcriptional regulator, at 2,240,517 to 2,241,470 _2115 Position (kb) 2238 2239 2240Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2237.698 kb on + strandat 2237.754 kb on + strandat 2237.880 kb on + strandat 2237.895 kb on + strand, within Dsui_2112at 2237.895 kb on + strandat 2238.287 kb on - strandat 2238.297 kb on - strandat 2238.331 kb on + strandat 2238.396 kb on + strandat 2238.396 kb on + strandat 2238.511 kb on + strandat 2238.536 kb on + strandat 2238.706 kb on + strandat 2238.714 kb on - strandat 2238.796 kb on + strand, within Dsui_2113at 2239.044 kb on - strand, within Dsui_2113at 2239.143 kb on - strandat 2239.355 kb on - strandat 2239.440 kb on + strandat 2239.692 kb on + strandat 2240.165 kb on + strand, within Dsui_2114at 2240.173 kb on - strandat 2240.309 kb on - strandat 2240.491 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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2,237,698 + -2.5
2,237,754 + +0.8
2,237,880 + -0.5
2,237,895 + Dsui_2112 0.21 -1.2
2,237,895 + +0.7
2,238,287 - +0.7
2,238,297 - +0.7
2,238,331 + +1.7
2,238,396 + +0.7
2,238,396 + +3.5
2,238,511 + +0.7
2,238,536 + +0.7
2,238,706 + -0.3
2,238,714 - +2.7
2,238,796 + Dsui_2113 0.10 -2.3
2,239,044 - Dsui_2113 0.35 +0.6
2,239,143 - -0.9
2,239,355 - -3.8
2,239,440 + +2.0
2,239,692 + -0.3
2,240,165 + Dsui_2114 0.87 -2.9
2,240,173 - +0.7
2,240,309 - +0.7
2,240,491 - +1.2

Or see this region's nucleotide sequence