Strain Fitness in Dechlorosoma suillum PS around Dsui_2078

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2077 and Dsui_2078 are separated by 153 nucleotidesDsui_2078 and Dsui_2079 are separated by 135 nucleotides Dsui_2077: Dsui_2077 - cAMP-binding protein, at 2,196,831 to 2,198,312 _2077 Dsui_2078: Dsui_2078 - cytochrome c551/c552, at 2,198,466 to 2,198,774 _2078 Dsui_2079: Dsui_2079 - histidine kinase, at 2,198,910 to 2,200,745 _2079 Position (kb) 2198 2199Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2197.777 kb on + strand, within Dsui_2077at 2197.814 kb on + strand, within Dsui_2077at 2197.839 kb on + strand, within Dsui_2077at 2197.977 kb on + strand, within Dsui_2077at 2197.996 kb on + strand, within Dsui_2077at 2198.054 kb on - strandat 2198.069 kb on - strandat 2198.095 kb on + strand, within Dsui_2077at 2198.236 kb on - strandat 2198.265 kb on + strandat 2198.316 kb on - strandat 2198.320 kb on + strandat 2198.423 kb on + strandat 2198.426 kb on - strandat 2198.490 kb on - strandat 2198.538 kb on + strand, within Dsui_2078at 2198.543 kb on + strand, within Dsui_2078at 2198.543 kb on + strandat 2198.551 kb on - strand, within Dsui_2078at 2198.567 kb on - strand, within Dsui_2078at 2198.603 kb on + strandat 2198.624 kb on + strandat 2198.624 kb on + strand, within Dsui_2078at 2198.624 kb on + strand, within Dsui_2078at 2198.776 kb on + strandat 2198.986 kb on + strandat 2199.037 kb on + strandat 2199.091 kb on - strandat 2199.172 kb on - strandat 2199.179 kb on + strandat 2199.216 kb on - strandat 2199.447 kb on - strandat 2199.651 kb on - strandat 2199.701 kb on + strand, within Dsui_2079at 2199.709 kb on - strand, within Dsui_2079at 2199.755 kb on + strand, within Dsui_2079

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
remove
2,197,777 + Dsui_2077 0.64 +2.3
2,197,814 + Dsui_2077 0.66 +3.3
2,197,839 + Dsui_2077 0.68 +2.7
2,197,977 + Dsui_2077 0.77 +5.4
2,197,996 + Dsui_2077 0.79 +2.5
2,198,054 - +1.6
2,198,069 - +0.7
2,198,095 + Dsui_2077 0.85 +2.9
2,198,236 - +3.6
2,198,265 + +2.6
2,198,316 - +0.7
2,198,320 + +0.7
2,198,423 + -0.7
2,198,426 - +0.7
2,198,490 - -0.4
2,198,538 + Dsui_2078 0.23 +0.6
2,198,543 + Dsui_2078 0.25 -0.5
2,198,543 + -2.3
2,198,551 - Dsui_2078 0.28 -0.8
2,198,567 - Dsui_2078 0.33 -1.3
2,198,603 + +0.7
2,198,624 + +0.4
2,198,624 + Dsui_2078 0.51 -0.8
2,198,624 + Dsui_2078 0.51 +1.7
2,198,776 + -1.2
2,198,986 + -1.6
2,199,037 + -0.3
2,199,091 - -1.0
2,199,172 - +0.7
2,199,179 + -0.8
2,199,216 - +3.7
2,199,447 - +0.7
2,199,651 - +0.7
2,199,701 + Dsui_2079 0.43 +1.0
2,199,709 - Dsui_2079 0.44 +0.4
2,199,755 + Dsui_2079 0.46 +0.7

Or see this region's nucleotide sequence