Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1915 and Dsui_1916 are separated by 13 nucleotides Dsui_1916 and Dsui_1917 are separated by 21 nucleotides Dsui_1917 and Dsui_1918 are separated by 96 nucleotides
Dsui_1915: Dsui_1915 - cytochrome bd-type quinol oxidase, subunit 1, at 2,016,886 to 2,018,433
_1915
Dsui_1916: Dsui_1916 - cytochrome d oxidase cyd, subunit II, at 2,018,447 to 2,019,586
_1916
Dsui_1917: Dsui_1917 - cyd operon protein YbgT, at 2,019,608 to 2,019,703
_1917
Dsui_1918: Dsui_1918 - TIGR03549 family protein, at 2,019,800 to 2,022,013
_1918
Position (kb)
2018
2019
2020 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2017.648 kb on - strand at 2017.648 kb on - strand, within Dsui_1915 at 2017.707 kb on + strand at 2017.864 kb on + strand, within Dsui_1915 at 2017.908 kb on + strand at 2017.938 kb on + strand, within Dsui_1915 at 2017.946 kb on - strand at 2017.981 kb on - strand, within Dsui_1915 at 2018.123 kb on + strand at 2018.198 kb on + strand at 2018.365 kb on - strand at 2018.427 kb on + strand at 2018.496 kb on - strand at 2018.503 kb on + strand at 2018.799 kb on + strand at 2018.834 kb on + strand at 2018.848 kb on - strand, within Dsui_1916 at 2018.929 kb on + strand, within Dsui_1916 at 2019.042 kb on - strand, within Dsui_1916 at 2019.105 kb on + strand, within Dsui_1916 at 2019.249 kb on + strand, within Dsui_1916 at 2019.259 kb on + strand, within Dsui_1916 at 2019.342 kb on + strand at 2019.396 kb on + strand at 2019.404 kb on - strand at 2019.414 kb on - strand at 2019.414 kb on - strand at 2019.471 kb on + strand, within Dsui_1916 at 2019.568 kb on + strand at 2019.576 kb on - strand at 2019.896 kb on + strand at 2019.909 kb on - strand at 2019.931 kb on + strand at 2020.073 kb on + strand, within Dsui_1918 at 2020.179 kb on - strand, within Dsui_1918 at 2020.198 kb on - strand, within Dsui_1918 at 2020.198 kb on - strand, within Dsui_1918 at 2020.316 kb on - strand, within Dsui_1918 at 2020.372 kb on + strand at 2020.444 kb on + strand, within Dsui_1918
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 2,017,648 - -1.8 2,017,648 - Dsui_1915 0.49 -0.6 2,017,707 + +0.8 2,017,864 + Dsui_1915 0.63 -3.9 2,017,908 + +0.8 2,017,938 + Dsui_1915 0.68 +0.2 2,017,946 - -0.3 2,017,981 - Dsui_1915 0.71 +0.3 2,018,123 + -1.2 2,018,198 + +0.8 2,018,365 - -0.9 2,018,427 + +1.8 2,018,496 - +0.8 2,018,503 + +0.8 2,018,799 + +0.8 2,018,834 + -0.3 2,018,848 - Dsui_1916 0.35 +0.8 2,018,929 + Dsui_1916 0.42 -0.7 2,019,042 - Dsui_1916 0.52 +1.8 2,019,105 + Dsui_1916 0.58 -1.8 2,019,249 + Dsui_1916 0.70 -0.9 2,019,259 + Dsui_1916 0.71 -2.7 2,019,342 + -0.9 2,019,396 + -2.7 2,019,404 - -0.2 2,019,414 - +1.8 2,019,414 - +3.1 2,019,471 + Dsui_1916 0.90 -0.4 2,019,568 + +0.1 2,019,576 - +0.6 2,019,896 + -1.9 2,019,909 - -0.3 2,019,931 + +2.1 2,020,073 + Dsui_1918 0.12 +2.0 2,020,179 - Dsui_1918 0.17 +0.2 2,020,198 - Dsui_1918 0.18 +1.5 2,020,198 - Dsui_1918 0.18 +0.3 2,020,316 - Dsui_1918 0.23 +0.3 2,020,372 + +0.8 2,020,444 + Dsui_1918 0.29 +0.4
Or see this region's nucleotide sequence