Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1838 and Dsui_1839 are separated by 81 nucleotides Dsui_1839 and Dsui_1840 are separated by 11 nucleotides Dsui_1840 and Dsui_1841 are separated by 66 nucleotides Dsui_1841 and Dsui_1842 are separated by 10 nucleotides Dsui_1842 and Dsui_1843 are separated by 579 nucleotides
Dsui_1838: Dsui_1838 - spermidine synthase, at 1,936,465 to 1,937,229
_1838
Dsui_1839: Dsui_1839 - hypothetical protein, at 1,937,311 to 1,937,706
_1839
Dsui_1840: Dsui_1840 - hypothetical protein, at 1,937,718 to 1,937,912
_1840
Dsui_1841: Dsui_1841 - hypothetical protein, at 1,937,979 to 1,938,401
_1841
Dsui_1842: Dsui_1842 - hypothetical protein, at 1,938,412 to 1,938,594
_1842
Dsui_1843: Dsui_1843 - hypothetical protein, at 1,939,174 to 1,939,590
_1843
Position (kb)
1937
1938
1939 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1936.989 kb on - strand, within Dsui_1838 at 1937.110 kb on - strand, within Dsui_1838 at 1937.112 kb on + strand, within Dsui_1838 at 1937.147 kb on + strand, within Dsui_1838 at 1937.223 kb on - strand at 1937.224 kb on + strand at 1937.243 kb on + strand at 1937.251 kb on - strand at 1937.266 kb on - strand at 1937.345 kb on + strand at 1937.353 kb on - strand, within Dsui_1839 at 1937.358 kb on - strand, within Dsui_1839 at 1937.466 kb on - strand, within Dsui_1839 at 1937.620 kb on - strand, within Dsui_1839 at 1937.667 kb on + strand at 1937.760 kb on + strand, within Dsui_1840 at 1937.760 kb on + strand, within Dsui_1840 at 1937.770 kb on + strand, within Dsui_1840 at 1937.778 kb on - strand, within Dsui_1840 at 1937.779 kb on + strand, within Dsui_1840 at 1937.862 kb on - strand, within Dsui_1840 at 1937.873 kb on - strand, within Dsui_1840 at 1937.875 kb on + strand, within Dsui_1840 at 1937.907 kb on + strand at 1937.909 kb on + strand at 1937.941 kb on + strand at 1937.986 kb on + strand at 1938.000 kb on + strand at 1938.040 kb on - strand, within Dsui_1841 at 1938.076 kb on - strand at 1938.129 kb on + strand, within Dsui_1841 at 1938.277 kb on - strand, within Dsui_1841 at 1938.324 kb on - strand at 1938.334 kb on - strand, within Dsui_1841 at 1938.352 kb on + strand, within Dsui_1841 at 1938.560 kb on - strand, within Dsui_1842 at 1938.577 kb on + strand at 1938.580 kb on - strand at 1938.601 kb on + strand at 1938.601 kb on + strand at 1938.601 kb on + strand at 1938.609 kb on - strand at 1938.762 kb on + strand at 1938.825 kb on + strand at 1938.827 kb on - strand at 1938.893 kb on + strand at 1938.917 kb on + strand at 1938.917 kb on + strand at 1938.934 kb on + strand at 1938.934 kb on + strand at 1938.942 kb on - strand at 1938.942 kb on - strand at 1938.942 kb on - strand at 1938.995 kb on + strand at 1938.995 kb on + strand at 1939.003 kb on - strand at 1939.217 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.229 kb on + strand, within Dsui_1843 at 1939.230 kb on - strand, within Dsui_1843 at 1939.230 kb on - strand, within Dsui_1843 at 1939.230 kb on - strand, within Dsui_1843 at 1939.311 kb on - strand, within Dsui_1843 at 1939.330 kb on + strand, within Dsui_1843 at 1939.330 kb on + strand, within Dsui_1843
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 1,936,989 - Dsui_1838 0.68 -1.3 1,937,110 - Dsui_1838 0.84 -0.5 1,937,112 + Dsui_1838 0.85 +3.6 1,937,147 + Dsui_1838 0.89 -0.3 1,937,223 - +0.0 1,937,224 + -0.6 1,937,243 + -1.5 1,937,251 - +2.6 1,937,266 - +0.5 1,937,345 + -1.5 1,937,353 - Dsui_1839 0.11 +0.1 1,937,358 - Dsui_1839 0.12 +2.0 1,937,466 - Dsui_1839 0.39 +0.8 1,937,620 - Dsui_1839 0.78 -1.4 1,937,667 + -0.2 1,937,760 + Dsui_1840 0.22 +0.0 1,937,760 + Dsui_1840 0.22 +0.8 1,937,770 + Dsui_1840 0.27 -0.4 1,937,778 - Dsui_1840 0.31 +0.3 1,937,779 + Dsui_1840 0.31 +1.8 1,937,862 - Dsui_1840 0.74 -1.3 1,937,873 - Dsui_1840 0.79 +1.8 1,937,875 + Dsui_1840 0.81 +1.8 1,937,907 + +1.8 1,937,909 + -1.2 1,937,941 + +1.1 1,937,986 + +0.8 1,938,000 + +1.5 1,938,040 - Dsui_1841 0.14 -1.2 1,938,076 - -0.8 1,938,129 + Dsui_1841 0.35 -1.5 1,938,277 - Dsui_1841 0.70 +0.8 1,938,324 - +0.8 1,938,334 - Dsui_1841 0.84 -0.8 1,938,352 + Dsui_1841 0.88 +0.8 1,938,560 - Dsui_1842 0.81 -0.2 1,938,577 + -1.4 1,938,580 - +1.5 1,938,601 + +1.0 1,938,601 + +1.8 1,938,601 + -0.6 1,938,609 - +0.8 1,938,762 + -1.1 1,938,825 + -0.7 1,938,827 - -0.2 1,938,893 + -0.5 1,938,917 + -0.6 1,938,917 + +0.8 1,938,934 + -0.6 1,938,934 + +0.9 1,938,942 - -0.7 1,938,942 - -0.7 1,938,942 - -1.8 1,938,995 + -1.3 1,938,995 + +0.1 1,939,003 - -0.7 1,939,217 + Dsui_1843 0.10 -2.0 1,939,222 + Dsui_1843 0.12 +0.2 1,939,222 + Dsui_1843 0.12 +0.6 1,939,222 + Dsui_1843 0.12 -0.1 1,939,222 + Dsui_1843 0.12 +0.5 1,939,229 + Dsui_1843 0.13 +0.1 1,939,230 - Dsui_1843 0.13 -0.2 1,939,230 - Dsui_1843 0.13 -1.0 1,939,230 - Dsui_1843 0.13 -2.0 1,939,311 - Dsui_1843 0.33 -0.8 1,939,330 + Dsui_1843 0.37 +1.8 1,939,330 + Dsui_1843 0.37 +2.2
Or see this region's nucleotide sequence