Strain Fitness in Dechlorosoma suillum PS around Dsui_1663

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1662 and Dsui_1663 are separated by 162 nucleotidesDsui_1663 and Dsui_1664 are separated by 101 nucleotidesDsui_1664 and Dsui_1665 are separated by 33 nucleotides Dsui_1662: Dsui_1662 - Oxidoreductase NAD-binding domain/Flavodoxin, at 1,745,910 to 1,747,262 _1662 Dsui_1663: Dsui_1663 - ABC-type Co2+ transport system, periplasmic component, at 1,747,425 to 1,748,228 _1663 Dsui_1664: Dsui_1664 - putative periplasmic protein, at 1,748,330 to 1,748,854 _1664 Dsui_1665: Dsui_1665 - hypothetical protein, at 1,748,888 to 1,749,547 _1665 Position (kb) 1747 1748 1749Strain fitness (log2 ratio) -1 0 1 2at 1746.436 kb on + strandat 1746.805 kb on - strand, within Dsui_1662at 1746.891 kb on + strand, within Dsui_1662at 1746.891 kb on + strandat 1746.907 kb on + strand, within Dsui_1662at 1747.028 kb on + strandat 1747.029 kb on + strandat 1747.047 kb on - strand, within Dsui_1662at 1747.196 kb on - strandat 1747.326 kb on - strandat 1747.642 kb on - strand, within Dsui_1663at 1747.690 kb on + strand, within Dsui_1663at 1747.845 kb on + strandat 1747.880 kb on - strand, within Dsui_1663at 1747.892 kb on + strand, within Dsui_1663at 1747.900 kb on - strand, within Dsui_1663at 1747.939 kb on + strand, within Dsui_1663at 1747.947 kb on - strand, within Dsui_1663at 1748.093 kb on - strand, within Dsui_1663at 1748.116 kb on + strandat 1748.116 kb on + strandat 1748.116 kb on + strand, within Dsui_1663at 1748.276 kb on - strandat 1748.289 kb on + strandat 1748.290 kb on - strandat 1748.290 kb on - strandat 1748.290 kb on - strandat 1748.290 kb on - strandat 1748.328 kb on + strandat 1748.336 kb on - strandat 1748.341 kb on + strandat 1748.349 kb on - strandat 1748.371 kb on + strandat 1748.439 kb on - strand, within Dsui_1664at 1748.439 kb on - strand, within Dsui_1664at 1748.550 kb on - strand, within Dsui_1664at 1748.564 kb on + strand, within Dsui_1664at 1748.661 kb on + strandat 1748.735 kb on - strand, within Dsui_1664at 1748.906 kb on + strandat 1748.935 kb on + strandat 1748.949 kb on - strandat 1749.069 kb on + strand, within Dsui_1665at 1749.077 kb on - strand, within Dsui_1665at 1749.154 kb on + strand, within Dsui_1665at 1749.185 kb on - strand, within Dsui_1665

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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1,746,436 + -0.7
1,746,805 - Dsui_1662 0.66 +0.4
1,746,891 + Dsui_1662 0.73 +1.3
1,746,891 + +1.0
1,746,907 + Dsui_1662 0.74 +0.7
1,747,028 + +1.0
1,747,029 + -0.5
1,747,047 - Dsui_1662 0.84 -1.1
1,747,196 - +1.2
1,747,326 - -0.4
1,747,642 - Dsui_1663 0.27 +0.4
1,747,690 + Dsui_1663 0.33 -0.2
1,747,845 + -0.0
1,747,880 - Dsui_1663 0.57 -0.6
1,747,892 + Dsui_1663 0.58 +1.7
1,747,900 - Dsui_1663 0.59 -0.3
1,747,939 + Dsui_1663 0.64 +0.9
1,747,947 - Dsui_1663 0.65 +0.2
1,748,093 - Dsui_1663 0.83 +1.4
1,748,116 + +0.8
1,748,116 + +0.1
1,748,116 + Dsui_1663 0.86 -0.4
1,748,276 - +0.1
1,748,289 + -0.6
1,748,290 - +0.2
1,748,290 - +0.5
1,748,290 - +0.5
1,748,290 - -1.2
1,748,328 + -0.1
1,748,336 - -0.3
1,748,341 + +0.1
1,748,349 - +0.1
1,748,371 + +1.8
1,748,439 - Dsui_1664 0.21 -0.4
1,748,439 - Dsui_1664 0.21 -0.5
1,748,550 - Dsui_1664 0.42 -0.8
1,748,564 + Dsui_1664 0.45 -0.8
1,748,661 + -0.2
1,748,735 - Dsui_1664 0.77 -1.6
1,748,906 + -0.1
1,748,935 + -0.1
1,748,949 - +1.2
1,749,069 + Dsui_1665 0.27 -1.0
1,749,077 - Dsui_1665 0.29 -0.5
1,749,154 + Dsui_1665 0.40 -0.2
1,749,185 - Dsui_1665 0.45 -0.6

Or see this region's nucleotide sequence