Strain Fitness in Dechlorosoma suillum PS around Dsui_1609

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1607 and Dsui_1608 are separated by 63 nucleotidesDsui_1608 and Dsui_1609 are separated by 49 nucleotidesDsui_1609 and Dsui_1610 are separated by 129 nucleotides Dsui_1607: Dsui_1607 - putative membrane-associated protein, at 1,691,355 to 1,692,332 _1607 Dsui_1608: Dsui_1608 - hypothetical protein, at 1,692,396 to 1,692,704 _1608 Dsui_1609: Dsui_1609 - Thiopurine S-methyltransferase (TPMT), at 1,692,754 to 1,693,371 _1609 Dsui_1610: Dsui_1610 - Protein of unknown function (DUF3079), at 1,693,501 to 1,693,725 _1610 Position (kb) 1692 1693 1694Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1691.783 kb on - strand, within Dsui_1607at 1691.936 kb on + strand, within Dsui_1607at 1691.962 kb on - strand, within Dsui_1607at 1692.391 kb on + strandat 1692.519 kb on - strandat 1692.589 kb on + strandat 1692.658 kb on + strandat 1692.668 kb on + strandat 1692.758 kb on + strandat 1692.849 kb on - strand, within Dsui_1609at 1692.929 kb on + strand, within Dsui_1609at 1692.956 kb on + strand, within Dsui_1609at 1692.985 kb on + strand, within Dsui_1609at 1692.985 kb on + strand, within Dsui_1609at 1693.373 kb on - strandat 1693.422 kb on + strandat 1693.526 kb on - strandat 1693.541 kb on - strandat 1693.541 kb on - strand, within Dsui_1610at 1693.610 kb on + strand, within Dsui_1610at 1693.638 kb on + strand, within Dsui_1610at 1693.643 kb on + strand, within Dsui_1610at 1693.643 kb on + strand, within Dsui_1610at 1694.018 kb on - strandat 1694.071 kb on + strandat 1694.087 kb on + strandat 1694.087 kb on + strandat 1694.087 kb on + strandat 1694.087 kb on + strandat 1694.087 kb on + strandat 1694.087 kb on + strandat 1694.087 kb on + strandat 1694.087 kb on + strandat 1694.087 kb on + strandat 1694.087 kb on + strandat 1694.087 kb on + strandat 1694.095 kb on - strandat 1694.095 kb on - strandat 1694.131 kb on + strandat 1694.171 kb on + strandat 1694.189 kb on + strandat 1694.189 kb on + strandat 1694.189 kb on + strandat 1694.197 kb on - strandat 1694.207 kb on - strandat 1694.218 kb on + strandat 1694.234 kb on - strandat 1694.253 kb on + strandat 1694.261 kb on + strandat 1694.268 kb on + strandat 1694.295 kb on + strandat 1694.303 kb on - strandat 1694.305 kb on + strandat 1694.308 kb on - strandat 1694.308 kb on - strandat 1694.318 kb on - strandat 1694.350 kb on + strandat 1694.350 kb on + strandat 1694.350 kb on + strandat 1694.350 kb on + strandat 1694.358 kb on - strandat 1694.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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1,691,783 - Dsui_1607 0.44 +0.2
1,691,936 + Dsui_1607 0.59 -1.5
1,691,962 - Dsui_1607 0.62 +2.8
1,692,391 + -0.7
1,692,519 - -1.1
1,692,589 + +1.7
1,692,658 + +0.6
1,692,668 + +2.4
1,692,758 + +3.9
1,692,849 - Dsui_1609 0.15 -0.0
1,692,929 + Dsui_1609 0.28 +0.2
1,692,956 + Dsui_1609 0.33 -1.2
1,692,985 + Dsui_1609 0.37 -2.0
1,692,985 + Dsui_1609 0.37 -1.4
1,693,373 - +3.3
1,693,422 + +0.0
1,693,526 - +2.3
1,693,541 - +0.6
1,693,541 - Dsui_1610 0.18 +0.1
1,693,610 + Dsui_1610 0.48 -0.7
1,693,638 + Dsui_1610 0.61 -2.1
1,693,643 + Dsui_1610 0.63 +2.7
1,693,643 + Dsui_1610 0.63 -0.5
1,694,018 - +1.0
1,694,071 + -1.1
1,694,087 + +0.7
1,694,087 + +0.2
1,694,087 + -1.0
1,694,087 + -0.7
1,694,087 + -0.3
1,694,087 + +0.7
1,694,087 + -1.6
1,694,087 + -0.4
1,694,087 + -0.9
1,694,087 + -0.1
1,694,087 + -0.7
1,694,095 - -1.0
1,694,095 - -0.1
1,694,131 + +1.3
1,694,171 + -0.3
1,694,189 + -2.2
1,694,189 + +0.7
1,694,189 + -0.0
1,694,197 - +0.7
1,694,207 - +0.7
1,694,218 + +0.2
1,694,234 - +0.2
1,694,253 + -0.6
1,694,261 + +3.6
1,694,268 + +0.7
1,694,295 + +3.1
1,694,303 - +0.7
1,694,305 + +4.1
1,694,308 - -1.1
1,694,308 - -0.3
1,694,318 - +0.1
1,694,350 + -1.4
1,694,350 + +0.7
1,694,350 + +1.7
1,694,350 + +0.7
1,694,358 - +0.0
1,694,358 - +0.7

Or see this region's nucleotide sequence