Strain Fitness in Dechlorosoma suillum PS around Dsui_1276

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1273 and Dsui_1274 are separated by 10 nucleotidesDsui_1274 and Dsui_1275 are separated by 36 nucleotidesDsui_1275 and Dsui_1276 are separated by 25 nucleotidesDsui_1276 and Dsui_1277 are separated by 14 nucleotides Dsui_1273: Dsui_1273 - Rhodanese-related sulfurtransferase, at 1,336,585 to 1,336,998 _1273 Dsui_1274: Dsui_1274 - Glutaredoxin, GrxC family, at 1,337,009 to 1,337,275 _1274 Dsui_1275: Dsui_1275 - protein-export chaperone SecB, at 1,337,312 to 1,337,776 _1275 Dsui_1276: Dsui_1276 - hypothetical protein, at 1,337,802 to 1,338,275 _1276 Dsui_1277: Dsui_1277 - glycerol-3-phosphate dehydrogenase, at 1,338,290 to 1,339,285 _1277 Position (kb) 1337 1338 1339Strain fitness (log2 ratio) -2 -1 0 1 2at 1336.980 kb on + strandat 1336.992 kb on + strandat 1336.992 kb on + strandat 1336.992 kb on + strandat 1336.992 kb on + strandat 1336.994 kb on + strandat 1337.023 kb on + strandat 1337.077 kb on + strand, within Dsui_1274at 1337.077 kb on + strand, within Dsui_1274at 1337.104 kb on + strand, within Dsui_1274at 1337.163 kb on + strand, within Dsui_1274at 1337.208 kb on + strand, within Dsui_1274at 1337.225 kb on + strand, within Dsui_1274at 1337.405 kb on + strand, within Dsui_1275at 1337.603 kb on + strand, within Dsui_1275at 1337.673 kb on + strand, within Dsui_1275at 1337.794 kb on + strandat 1338.019 kb on + strand, within Dsui_1276at 1338.050 kb on + strand, within Dsui_1276at 1338.050 kb on + strand, within Dsui_1276at 1338.174 kb on + strand, within Dsui_1276at 1338.195 kb on + strand, within Dsui_1276at 1338.276 kb on + strandat 1339.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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1,336,980 + -0.5
1,336,992 + +0.3
1,336,992 + -1.1
1,336,992 + -0.5
1,336,992 + +0.7
1,336,994 + -0.2
1,337,023 + -0.0
1,337,077 + Dsui_1274 0.25 +1.1
1,337,077 + Dsui_1274 0.25 +0.3
1,337,104 + Dsui_1274 0.36 +0.6
1,337,163 + Dsui_1274 0.58 +1.8
1,337,208 + Dsui_1274 0.75 -0.4
1,337,225 + Dsui_1274 0.81 +0.4
1,337,405 + Dsui_1275 0.20 -0.2
1,337,603 + Dsui_1275 0.63 -2.2
1,337,673 + Dsui_1275 0.78 -1.2
1,337,794 + -1.0
1,338,019 + Dsui_1276 0.46 +1.3
1,338,050 + Dsui_1276 0.52 +0.1
1,338,050 + Dsui_1276 0.52 +1.0
1,338,174 + Dsui_1276 0.78 -0.4
1,338,195 + Dsui_1276 0.83 -0.1
1,338,276 + -0.1
1,339,264 + +1.3

Or see this region's nucleotide sequence