Strain Fitness in Dechlorosoma suillum PS around Dsui_1250

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1248 and Dsui_1249 are separated by 71 nucleotidesDsui_1249 and Dsui_1250 overlap by 4 nucleotidesDsui_1250 and Dsui_1251 overlap by 8 nucleotidesDsui_1251 and Dsui_1252 are separated by 12 nucleotides Dsui_1248: Dsui_1248 - protein containing C-terminal region/beta chain of methionyl-tRNA synthetase, at 1,309,794 to 1,311,923 _1248 Dsui_1249: Dsui_1249 - hypothetical protein, at 1,311,995 to 1,312,267 _1249 Dsui_1250: Dsui_1250 - sulfate permease-like transporter, MFS superfamily, at 1,312,264 to 1,313,931 _1250 Dsui_1251: Dsui_1251 - acylphosphatase, at 1,313,924 to 1,314,211 _1251 Dsui_1252: Dsui_1252 - hypothetical protein, at 1,314,224 to 1,314,817 _1252 Position (kb) 1312 1313 1314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1311.425 kb on + strand, within Dsui_1248at 1311.972 kb on + strandat 1311.979 kb on + strandat 1312.001 kb on - strandat 1312.020 kb on + strandat 1312.056 kb on + strand, within Dsui_1249at 1312.135 kb on + strand, within Dsui_1249at 1312.187 kb on - strand, within Dsui_1249at 1312.192 kb on + strand, within Dsui_1249at 1312.200 kb on - strand, within Dsui_1249at 1312.224 kb on + strand, within Dsui_1249at 1312.513 kb on + strand, within Dsui_1250at 1312.594 kb on + strand, within Dsui_1250at 1312.594 kb on + strand, within Dsui_1250at 1312.602 kb on - strand, within Dsui_1250at 1312.602 kb on - strandat 1312.612 kb on + strand, within Dsui_1250at 1312.798 kb on - strand, within Dsui_1250at 1312.808 kb on - strand, within Dsui_1250at 1312.861 kb on - strand, within Dsui_1250at 1312.865 kb on - strand, within Dsui_1250at 1313.009 kb on + strand, within Dsui_1250at 1313.017 kb on - strand, within Dsui_1250at 1313.063 kb on - strand, within Dsui_1250at 1313.165 kb on + strand, within Dsui_1250at 1313.213 kb on + strand, within Dsui_1250at 1313.221 kb on - strand, within Dsui_1250at 1313.265 kb on - strand, within Dsui_1250at 1313.266 kb on - strand, within Dsui_1250at 1313.272 kb on - strand, within Dsui_1250at 1313.274 kb on + strand, within Dsui_1250at 1313.485 kb on + strand, within Dsui_1250at 1313.487 kb on - strand, within Dsui_1250at 1313.493 kb on - strand, within Dsui_1250at 1313.516 kb on + strandat 1313.516 kb on + strand, within Dsui_1250at 1313.524 kb on - strand, within Dsui_1250at 1313.539 kb on + strand, within Dsui_1250at 1313.539 kb on + strand, within Dsui_1250at 1313.547 kb on - strandat 1313.625 kb on + strand, within Dsui_1250at 1313.672 kb on + strand, within Dsui_1250at 1313.672 kb on + strand, within Dsui_1250at 1313.720 kb on + strand, within Dsui_1250at 1313.747 kb on - strand, within Dsui_1250at 1313.958 kb on + strand, within Dsui_1251at 1314.002 kb on + strand, within Dsui_1251at 1314.010 kb on - strand, within Dsui_1251at 1314.067 kb on - strandat 1314.186 kb on + strandat 1314.196 kb on + strandat 1314.206 kb on - strandat 1314.260 kb on + strandat 1314.339 kb on - strand, within Dsui_1252at 1314.371 kb on + strand, within Dsui_1252at 1314.371 kb on + strand, within Dsui_1252at 1314.376 kb on - strandat 1314.384 kb on - strand, within Dsui_1252at 1314.443 kb on - strand, within Dsui_1252at 1314.458 kb on - strandat 1314.551 kb on + strand, within Dsui_1252at 1314.559 kb on - strand, within Dsui_1252at 1314.598 kb on + strand, within Dsui_1252at 1314.685 kb on - strandat 1314.803 kb on - strandat 1314.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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1,311,425 + Dsui_1248 0.77 +0.1
1,311,972 + -0.6
1,311,979 + -1.2
1,312,001 - -1.7
1,312,020 + -0.4
1,312,056 + Dsui_1249 0.22 -0.4
1,312,135 + Dsui_1249 0.51 +0.9
1,312,187 - Dsui_1249 0.70 -1.4
1,312,192 + Dsui_1249 0.72 +0.1
1,312,200 - Dsui_1249 0.75 -1.1
1,312,224 + Dsui_1249 0.84 -1.4
1,312,513 + Dsui_1250 0.15 -2.1
1,312,594 + Dsui_1250 0.20 -3.1
1,312,594 + Dsui_1250 0.20 +0.9
1,312,602 - Dsui_1250 0.20 -2.9
1,312,602 - -1.4
1,312,612 + Dsui_1250 0.21 -2.0
1,312,798 - Dsui_1250 0.32 -2.8
1,312,808 - Dsui_1250 0.33 -3.8
1,312,861 - Dsui_1250 0.36 -2.1
1,312,865 - Dsui_1250 0.36 -2.7
1,313,009 + Dsui_1250 0.45 -1.3
1,313,017 - Dsui_1250 0.45 -3.2
1,313,063 - Dsui_1250 0.48 -4.1
1,313,165 + Dsui_1250 0.54 -2.3
1,313,213 + Dsui_1250 0.57 -4.7
1,313,221 - Dsui_1250 0.57 -1.5
1,313,265 - Dsui_1250 0.60 -1.9
1,313,266 - Dsui_1250 0.60 -1.3
1,313,272 - Dsui_1250 0.60 -1.7
1,313,274 + Dsui_1250 0.61 -2.5
1,313,485 + Dsui_1250 0.73 +0.2
1,313,487 - Dsui_1250 0.73 -3.3
1,313,493 - Dsui_1250 0.74 +0.9
1,313,516 + -0.7
1,313,516 + Dsui_1250 0.75 -2.0
1,313,524 - Dsui_1250 0.76 -2.3
1,313,539 + Dsui_1250 0.76 -3.6
1,313,539 + Dsui_1250 0.76 -1.4
1,313,547 - -1.4
1,313,625 + Dsui_1250 0.82 -3.2
1,313,672 + Dsui_1250 0.84 +0.9
1,313,672 + Dsui_1250 0.84 -2.1
1,313,720 + Dsui_1250 0.87 -2.9
1,313,747 - Dsui_1250 0.89 -2.5
1,313,958 + Dsui_1251 0.12 +0.3
1,314,002 + Dsui_1251 0.27 -0.2
1,314,010 - Dsui_1251 0.30 -1.6
1,314,067 - +0.9
1,314,186 + -1.3
1,314,196 + -0.5
1,314,206 - +0.9
1,314,260 + +0.7
1,314,339 - Dsui_1252 0.19 +0.2
1,314,371 + Dsui_1252 0.25 -0.2
1,314,371 + Dsui_1252 0.25 -0.5
1,314,376 - +1.9
1,314,384 - Dsui_1252 0.27 -1.8
1,314,443 - Dsui_1252 0.37 +0.0
1,314,458 - -1.9
1,314,551 + Dsui_1252 0.55 +2.5
1,314,559 - Dsui_1252 0.56 +0.2
1,314,598 + Dsui_1252 0.63 -1.8
1,314,685 - +2.9
1,314,803 - -1.5
1,314,837 - -1.0

Or see this region's nucleotide sequence