Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1230 and Dsui_1231 are separated by 0 nucleotides Dsui_1231 and Dsui_1232 are separated by 76 nucleotides Dsui_1232 and Dsui_1233 are separated by 160 nucleotides
Dsui_1230: Dsui_1230 - TRAP-type uncharacterized transport system, periplasmic component, at 1,287,730 to 1,289,085
_1230
Dsui_1231: Dsui_1231 - ATPase involved in chromosome partitioning, at 1,289,086 to 1,289,709
_1231
Dsui_1232: Dsui_1232 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,289,786 to 1,290,874
_1232
Dsui_1233: Dsui_1233 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,291,035 to 1,292,126
_1233
Position (kb)
1289
1290
1291 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1288.901 kb on + strand, within Dsui_1230 at 1288.954 kb on + strand at 1288.986 kb on - strand at 1288.988 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1289.000 kb on + strand at 1289.006 kb on - strand at 1289.006 kb on - strand at 1289.006 kb on - strand at 1289.006 kb on - strand at 1289.047 kb on - strand at 1289.129 kb on + strand at 1289.134 kb on + strand at 1289.195 kb on + strand, within Dsui_1231 at 1289.277 kb on - strand, within Dsui_1231 at 1289.353 kb on + strand, within Dsui_1231 at 1289.361 kb on - strand, within Dsui_1231 at 1289.361 kb on - strand, within Dsui_1231 at 1289.366 kb on + strand, within Dsui_1231 at 1289.381 kb on + strand, within Dsui_1231 at 1289.384 kb on - strand, within Dsui_1231 at 1289.474 kb on + strand, within Dsui_1231 at 1289.477 kb on - strand, within Dsui_1231 at 1289.507 kb on - strand, within Dsui_1231 at 1289.632 kb on - strand, within Dsui_1231 at 1289.679 kb on + strand at 1289.679 kb on + strand at 1289.874 kb on + strand at 1289.882 kb on - strand at 1289.985 kb on - strand, within Dsui_1232 at 1289.993 kb on - strand, within Dsui_1232 at 1290.138 kb on + strand, within Dsui_1232 at 1290.141 kb on - strand, within Dsui_1232 at 1290.149 kb on - strand, within Dsui_1232 at 1290.156 kb on - strand, within Dsui_1232 at 1290.165 kb on - strand, within Dsui_1232 at 1290.181 kb on - strand, within Dsui_1232 at 1290.183 kb on + strand, within Dsui_1232 at 1290.297 kb on + strand, within Dsui_1232 at 1290.328 kb on + strand, within Dsui_1232 at 1290.511 kb on + strand, within Dsui_1232 at 1290.556 kb on - strand, within Dsui_1232 at 1290.564 kb on + strand, within Dsui_1232 at 1290.766 kb on - strand at 1290.780 kb on + strand at 1290.918 kb on - strand at 1291.010 kb on + strand at 1291.010 kb on + strand at 1291.021 kb on + strand at 1291.079 kb on + strand at 1291.123 kb on + strand at 1291.123 kb on + strand at 1291.123 kb on + strand at 1291.131 kb on - strand at 1291.131 kb on - strand at 1291.234 kb on + strand, within Dsui_1233 at 1291.234 kb on + strand, within Dsui_1233 at 1291.373 kb on + strand, within Dsui_1233 at 1291.381 kb on - strand, within Dsui_1233 at 1291.381 kb on - strand, within Dsui_1233 at 1291.386 kb on + strand, within Dsui_1233 at 1291.441 kb on - strand, within Dsui_1233 at 1291.510 kb on + strand, within Dsui_1233 at 1291.704 kb on + strand, within Dsui_1233 at 1291.716 kb on + strand, within Dsui_1233 at 1291.775 kb on + strand, within Dsui_1233 at 1291.793 kb on - strand, within Dsui_1233 at 1291.797 kb on + strand at 1291.798 kb on + strand, within Dsui_1233 at 1291.806 kb on - strand, within Dsui_1233 at 1291.806 kb on - strand, within Dsui_1233
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 1,288,901 + Dsui_1230 0.86 -0.0 1,288,954 + -0.3 1,288,986 - -1.4 1,288,988 + -0.7 1,288,998 + +0.1 1,288,998 + -1.4 1,288,998 + -1.4 1,288,998 + +0.4 1,288,998 + +0.3 1,288,998 + -0.4 1,288,998 + +0.2 1,288,998 + -0.8 1,289,000 + -0.9 1,289,006 - -0.5 1,289,006 - -0.6 1,289,006 - +0.2 1,289,006 - +1.0 1,289,047 - -0.2 1,289,129 + -0.8 1,289,134 + -1.3 1,289,195 + Dsui_1231 0.17 -0.2 1,289,277 - Dsui_1231 0.31 +0.3 1,289,353 + Dsui_1231 0.43 +0.3 1,289,361 - Dsui_1231 0.44 -0.3 1,289,361 - Dsui_1231 0.44 +0.9 1,289,366 + Dsui_1231 0.45 +0.2 1,289,381 + Dsui_1231 0.47 -0.3 1,289,384 - Dsui_1231 0.48 +0.9 1,289,474 + Dsui_1231 0.62 -0.2 1,289,477 - Dsui_1231 0.63 -0.2 1,289,507 - Dsui_1231 0.67 +0.4 1,289,632 - Dsui_1231 0.88 -0.7 1,289,679 + +0.1 1,289,679 + +0.2 1,289,874 + +1.9 1,289,882 - +0.3 1,289,985 - Dsui_1232 0.18 -0.2 1,289,993 - Dsui_1232 0.19 -0.3 1,290,138 + Dsui_1232 0.32 -1.0 1,290,141 - Dsui_1232 0.33 +0.3 1,290,149 - Dsui_1232 0.33 -2.6 1,290,156 - Dsui_1232 0.34 +0.7 1,290,165 - Dsui_1232 0.35 +0.9 1,290,181 - Dsui_1232 0.36 -2.3 1,290,183 + Dsui_1232 0.36 -0.2 1,290,297 + Dsui_1232 0.47 -0.2 1,290,328 + Dsui_1232 0.50 +0.9 1,290,511 + Dsui_1232 0.67 -0.9 1,290,556 - Dsui_1232 0.71 -0.7 1,290,564 + Dsui_1232 0.71 +0.9 1,290,766 - -0.0 1,290,780 + -1.0 1,290,918 - -0.5 1,291,010 + +0.6 1,291,010 + +0.3 1,291,021 + +0.6 1,291,079 + -0.1 1,291,123 + +2.5 1,291,123 + +0.9 1,291,123 + +0.3 1,291,131 - +0.7 1,291,131 - +0.7 1,291,234 + Dsui_1233 0.18 +0.6 1,291,234 + Dsui_1233 0.18 +0.9 1,291,373 + Dsui_1233 0.31 -1.1 1,291,381 - Dsui_1233 0.32 +1.3 1,291,381 - Dsui_1233 0.32 +0.1 1,291,386 + Dsui_1233 0.32 +1.1 1,291,441 - Dsui_1233 0.37 +0.7 1,291,510 + Dsui_1233 0.43 -0.1 1,291,704 + Dsui_1233 0.61 +1.2 1,291,716 + Dsui_1233 0.62 +0.7 1,291,775 + Dsui_1233 0.68 +0.7 1,291,793 - Dsui_1233 0.69 +0.2 1,291,797 + +0.7 1,291,798 + Dsui_1233 0.70 +0.9 1,291,806 - Dsui_1233 0.71 +1.7 1,291,806 - Dsui_1233 0.71 +0.2
Or see this region's nucleotide sequence