Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1090 and Dsui_1091 are separated by 68 nucleotides Dsui_1091 and Dsui_1092 are separated by 22 nucleotides
Dsui_1090: Dsui_1090 - methyl-accepting chemotaxis protein, at 1,128,774 to 1,130,915
_1090
Dsui_1091: Dsui_1091 - protein-disulfide isomerase, at 1,130,984 to 1,131,697
_1091
Dsui_1092: Dsui_1092 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,131,720 to 1,132,877
_1092
Position (kb)
1130
1131
1132 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1129.984 kb on - strand, within Dsui_1090 at 1129.999 kb on + strand, within Dsui_1090 at 1130.009 kb on + strand, within Dsui_1090 at 1130.083 kb on + strand, within Dsui_1090 at 1130.083 kb on + strand, within Dsui_1090 at 1130.091 kb on - strand, within Dsui_1090 at 1130.146 kb on - strand, within Dsui_1090 at 1130.180 kb on - strand, within Dsui_1090 at 1130.192 kb on - strand, within Dsui_1090 at 1130.234 kb on + strand, within Dsui_1090 at 1130.270 kb on + strand, within Dsui_1090 at 1130.272 kb on - strand, within Dsui_1090 at 1130.302 kb on - strand, within Dsui_1090 at 1130.341 kb on - strand, within Dsui_1090 at 1130.601 kb on + strand, within Dsui_1090 at 1130.609 kb on - strand, within Dsui_1090 at 1130.672 kb on - strand, within Dsui_1090 at 1130.714 kb on - strand at 1130.754 kb on - strand at 1130.845 kb on - strand at 1130.902 kb on - strand at 1130.953 kb on + strand at 1130.997 kb on - strand at 1130.997 kb on - strand at 1131.019 kb on + strand at 1131.049 kb on - strand at 1131.067 kb on + strand, within Dsui_1091 at 1131.067 kb on + strand, within Dsui_1091 at 1131.111 kb on - strand, within Dsui_1091 at 1131.113 kb on + strand, within Dsui_1091 at 1131.150 kb on + strand at 1131.177 kb on - strand, within Dsui_1091 at 1131.225 kb on - strand, within Dsui_1091 at 1131.260 kb on - strand, within Dsui_1091 at 1131.305 kb on - strand, within Dsui_1091 at 1131.366 kb on + strand, within Dsui_1091 at 1131.396 kb on - strand, within Dsui_1091 at 1131.467 kb on - strand, within Dsui_1091 at 1131.518 kb on - strand, within Dsui_1091 at 1131.520 kb on - strand, within Dsui_1091 at 1131.530 kb on + strand, within Dsui_1091 at 1131.580 kb on - strand, within Dsui_1091 at 1131.660 kb on + strand at 1131.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 1,129,984 - Dsui_1090 0.56 -0.5 1,129,999 + Dsui_1090 0.57 -0.6 1,130,009 + Dsui_1090 0.58 -0.7 1,130,083 + Dsui_1090 0.61 +0.9 1,130,083 + Dsui_1090 0.61 -2.2 1,130,091 - Dsui_1090 0.61 -1.3 1,130,146 - Dsui_1090 0.64 +0.4 1,130,180 - Dsui_1090 0.66 -2.0 1,130,192 - Dsui_1090 0.66 +0.9 1,130,234 + Dsui_1090 0.68 -0.2 1,130,270 + Dsui_1090 0.70 -0.6 1,130,272 - Dsui_1090 0.70 +1.7 1,130,302 - Dsui_1090 0.71 -2.2 1,130,341 - Dsui_1090 0.73 +0.9 1,130,601 + Dsui_1090 0.85 +2.1 1,130,609 - Dsui_1090 0.86 +0.9 1,130,672 - Dsui_1090 0.89 -0.6 1,130,714 - +4.1 1,130,754 - -0.6 1,130,845 - +0.2 1,130,902 - -0.8 1,130,953 + -0.1 1,130,997 - +3.1 1,130,997 - +0.4 1,131,019 + -1.4 1,131,049 - -1.1 1,131,067 + Dsui_1091 0.12 -1.1 1,131,067 + Dsui_1091 0.12 -1.2 1,131,111 - Dsui_1091 0.18 -0.3 1,131,113 + Dsui_1091 0.18 -0.8 1,131,150 + +0.9 1,131,177 - Dsui_1091 0.27 -1.5 1,131,225 - Dsui_1091 0.34 -0.7 1,131,260 - Dsui_1091 0.39 +0.3 1,131,305 - Dsui_1091 0.45 -1.6 1,131,366 + Dsui_1091 0.54 -1.6 1,131,396 - Dsui_1091 0.58 -1.9 1,131,467 - Dsui_1091 0.68 -1.4 1,131,518 - Dsui_1091 0.75 -0.2 1,131,520 - Dsui_1091 0.75 +0.1 1,131,530 + Dsui_1091 0.76 -3.0 1,131,580 - Dsui_1091 0.83 -1.7 1,131,660 + -0.6 1,131,741 - -0.4
Or see this region's nucleotide sequence