Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0705 and Dsui_0706 are separated by 65 nucleotides Dsui_0706 and Dsui_0707 overlap by 4 nucleotides Dsui_0707 and Dsui_0708 are separated by 124 nucleotides
Dsui_0705: Dsui_0705 - ABC-type (unclassified) transport system, ATPase component, at 700,313 to 701,059
_0705
Dsui_0706: Dsui_0706 - hypothetical protein, at 701,125 to 701,580
_0706
Dsui_0707: Dsui_0707 - protein RecA, at 701,577 to 702,599
_0707
Dsui_0708: Dsui_0708 - PAS domain S-box, at 702,724 to 704,817
_0708
Position (kb) 701
702
703 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 701.087 kb on - strand at 701.100 kb on + strand at 701.109 kb on - strand at 701.135 kb on + strand at 701.452 kb on + strand at 701.532 kb on - strand, within Dsui_0706 at 701.532 kb on - strand, within Dsui_0706 at 701.599 kb on + strand at 701.605 kb on + strand at 701.605 kb on + strand at 701.616 kb on + strand at 701.668 kb on + strand at 701.872 kb on - strand, within Dsui_0707 at 702.020 kb on + strand, within Dsui_0707 at 702.046 kb on - strand, within Dsui_0707 at 702.067 kb on + strand at 702.085 kb on - strand, within Dsui_0707 at 702.190 kb on - strand, within Dsui_0707 at 702.344 kb on + strand at 702.380 kb on - strand, within Dsui_0707 at 702.393 kb on + strand, within Dsui_0707 at 702.469 kb on - strand, within Dsui_0707 at 702.585 kb on - strand at 702.634 kb on + strand at 702.665 kb on - strand at 702.673 kb on + strand at 702.774 kb on + strand at 702.798 kb on + strand at 702.890 kb on - strand at 702.966 kb on - strand, within Dsui_0708 at 702.978 kb on - strand, within Dsui_0708 at 702.978 kb on - strand, within Dsui_0708 at 702.995 kb on + strand, within Dsui_0708 at 703.073 kb on + strand, within Dsui_0708 at 703.081 kb on - strand at 703.207 kb on - strand at 703.235 kb on + strand, within Dsui_0708 at 703.235 kb on + strand, within Dsui_0708 at 703.315 kb on + strand, within Dsui_0708 at 703.318 kb on - strand at 703.363 kb on + strand, within Dsui_0708 at 703.366 kb on - strand at 703.436 kb on - strand, within Dsui_0708 at 703.489 kb on - strand at 703.489 kb on - strand, within Dsui_0708 at 703.525 kb on + strand, within Dsui_0708 at 703.533 kb on - strand, within Dsui_0708 at 703.562 kb on + strand, within Dsui_0708 at 703.579 kb on - strand at 703.593 kb on - strand, within Dsui_0708
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 701,087 - -1.4 701,100 + +1.0 701,109 - +0.1 701,135 + +0.9 701,452 + +0.9 701,532 - Dsui_0706 0.89 -0.2 701,532 - Dsui_0706 0.89 -0.1 701,599 + +4.6 701,605 + -0.5 701,605 + -0.5 701,616 + +0.5 701,668 + +0.9 701,872 - Dsui_0707 0.29 +2.9 702,020 + Dsui_0707 0.43 +0.9 702,046 - Dsui_0707 0.46 +1.9 702,067 + -1.3 702,085 - Dsui_0707 0.50 +3.2 702,190 - Dsui_0707 0.60 -0.6 702,344 + +0.9 702,380 - Dsui_0707 0.78 +2.2 702,393 + Dsui_0707 0.80 +2.5 702,469 - Dsui_0707 0.87 +0.9 702,585 - +2.9 702,634 + +2.5 702,665 - -0.5 702,673 + +0.9 702,774 + -1.0 702,798 + +0.9 702,890 - +1.5 702,966 - Dsui_0708 0.12 -0.3 702,978 - Dsui_0708 0.12 -0.5 702,978 - Dsui_0708 0.12 +0.4 702,995 + Dsui_0708 0.13 -1.6 703,073 + Dsui_0708 0.17 -1.3 703,081 - +0.9 703,207 - -1.7 703,235 + Dsui_0708 0.24 -0.9 703,235 + Dsui_0708 0.24 +0.4 703,315 + Dsui_0708 0.28 -0.6 703,318 - +0.9 703,363 + Dsui_0708 0.31 +0.9 703,366 - +0.9 703,436 - Dsui_0708 0.34 -0.3 703,489 - +0.8 703,489 - Dsui_0708 0.37 +2.9 703,525 + Dsui_0708 0.38 -0.4 703,533 - Dsui_0708 0.39 -0.9 703,562 + Dsui_0708 0.40 -1.2 703,579 - +0.9 703,593 - Dsui_0708 0.41 -0.1
Or see this region's nucleotide sequence