Strain Fitness in Dechlorosoma suillum PS around Dsui_0183

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0182 and Dsui_0183 are separated by 2 nucleotidesDsui_0183 and Dsui_0184 are separated by 187 nucleotidesDsui_0184 and Dsui_0185 are separated by 30 nucleotidesDsui_0185 and Dsui_0186 are separated by 23 nucleotides Dsui_0182: Dsui_0182 - hypothetical protein, at 183,690 to 184,331 _0182 Dsui_0183: Dsui_0183 - SOS response transcriptional repressor, RecA-mediated autopeptidase, at 184,334 to 184,930 _0183 Dsui_0184: Dsui_0184 - putative transcriptional regulator, at 185,118 to 185,351 _0184 Dsui_0185: Dsui_0185 - hypothetical protein, at 185,382 to 185,846 _0185 Dsui_0186: Dsui_0186 - DNA/RNA helicase, superfamily II, SNF2 family, at 185,870 to 188,398 _0186 Position (kb) 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 183.336 kb on + strandat 183.344 kb on - strandat 183.428 kb on - strandat 183.501 kb on + strandat 183.540 kb on + strandat 183.545 kb on + strandat 183.590 kb on - strandat 183.619 kb on - strandat 183.622 kb on + strandat 183.634 kb on + strandat 183.743 kb on - strandat 183.743 kb on - strandat 183.762 kb on - strand, within Dsui_0182at 183.768 kb on - strand, within Dsui_0182at 183.768 kb on - strand, within Dsui_0182at 183.773 kb on - strand, within Dsui_0182at 183.786 kb on + strand, within Dsui_0182at 183.848 kb on - strand, within Dsui_0182at 183.861 kb on + strand, within Dsui_0182at 183.863 kb on + strand, within Dsui_0182at 183.936 kb on + strand, within Dsui_0182at 183.947 kb on - strand, within Dsui_0182at 183.994 kb on + strand, within Dsui_0182at 183.997 kb on - strand, within Dsui_0182at 184.014 kb on + strand, within Dsui_0182at 184.022 kb on - strand, within Dsui_0182at 184.066 kb on + strand, within Dsui_0182at 184.066 kb on + strand, within Dsui_0182at 184.067 kb on + strand, within Dsui_0182at 184.067 kb on + strand, within Dsui_0182at 184.075 kb on - strand, within Dsui_0182at 184.108 kb on - strand, within Dsui_0182at 184.145 kb on + strand, within Dsui_0182at 184.179 kb on - strand, within Dsui_0182at 184.341 kb on - strandat 185.099 kb on - strandat 185.108 kb on - strandat 185.161 kb on - strand, within Dsui_0184at 185.270 kb on - strand, within Dsui_0184at 185.397 kb on + strandat 185.510 kb on - strand, within Dsui_0185at 185.554 kb on - strand, within Dsui_0185at 185.592 kb on - strand, within Dsui_0185at 185.665 kb on + strand, within Dsui_0185at 185.776 kb on + strand, within Dsui_0185at 185.843 kb on - strandat 185.843 kb on - strandat 185.843 kb on - strandat 185.848 kb on - strandat 185.885 kb on - strandat 185.898 kb on - strandat 185.907 kb on + strandat 185.907 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
remove
183,336 + -0.8
183,344 - -0.7
183,428 - -1.0
183,501 + -0.5
183,540 + +1.0
183,545 + -1.1
183,590 - -3.7
183,619 - -1.2
183,622 + +0.9
183,634 + -0.0
183,743 - -0.3
183,743 - -1.8
183,762 - Dsui_0182 0.11 -3.5
183,768 - Dsui_0182 0.12 +0.1
183,768 - Dsui_0182 0.12 -0.7
183,773 - Dsui_0182 0.13 -0.3
183,786 + Dsui_0182 0.15 +4.0
183,848 - Dsui_0182 0.25 -1.0
183,861 + Dsui_0182 0.27 +0.1
183,863 + Dsui_0182 0.27 +0.6
183,936 + Dsui_0182 0.38 -0.5
183,947 - Dsui_0182 0.40 -0.8
183,994 + Dsui_0182 0.47 -0.1
183,997 - Dsui_0182 0.48 -0.5
184,014 + Dsui_0182 0.50 +1.7
184,022 - Dsui_0182 0.52 +0.1
184,066 + Dsui_0182 0.59 +1.3
184,066 + Dsui_0182 0.59 -0.7
184,067 + Dsui_0182 0.59 -0.2
184,067 + Dsui_0182 0.59 -1.7
184,075 - Dsui_0182 0.60 -0.3
184,108 - Dsui_0182 0.65 +0.9
184,145 + Dsui_0182 0.71 -1.0
184,179 - Dsui_0182 0.76 -0.0
184,341 - -1.7
185,099 - -0.5
185,108 - -0.6
185,161 - Dsui_0184 0.18 +0.9
185,270 - Dsui_0184 0.65 +1.7
185,397 + -2.8
185,510 - Dsui_0185 0.28 -1.0
185,554 - Dsui_0185 0.37 +0.5
185,592 - Dsui_0185 0.45 -1.8
185,665 + Dsui_0185 0.61 +2.0
185,776 + Dsui_0185 0.85 +0.4
185,843 - +2.9
185,843 - +0.4
185,843 - +1.4
185,848 - +0.0
185,885 - +0.0
185,898 - -2.1
185,907 + +2.4
185,907 + -1.1

Or see this region's nucleotide sequence