Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0175 and Dsui_0176 are separated by 2 nucleotides Dsui_0176 and Dsui_0177 are separated by 171 nucleotides Dsui_0177 and Dsui_0178 are separated by 28 nucleotides Dsui_0178 and Dsui_0179 are separated by 15 nucleotides Dsui_0179 and Dsui_0180 are separated by 1 nucleotides
Dsui_0175: Dsui_0175 - hypothetical protein, at 178,073 to 179,881
_0175
Dsui_0176: Dsui_0176 - ribosome modulation factor, at 179,884 to 180,588
_0176
Dsui_0177: Dsui_0177 - hypothetical protein, at 180,760 to 181,641
_0177
Dsui_0178: Dsui_0178 - hypothetical protein, at 181,670 to 182,509
_0178
Dsui_0179: Dsui_0179 - hypothetical protein, at 182,525 to 182,614
_0179
Dsui_0180: Dsui_0180 - hypothetical protein, at 182,616 to 182,885
_0180
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 179.776 kb on + strand at 179.840 kb on + strand at 179.851 kb on - strand at 179.930 kb on + strand at 180.027 kb on - strand at 180.077 kb on + strand, within Dsui_0176 at 180.195 kb on + strand, within Dsui_0176 at 180.288 kb on - strand, within Dsui_0176 at 180.365 kb on - strand at 180.403 kb on - strand, within Dsui_0176 at 180.470 kb on + strand, within Dsui_0176 at 180.470 kb on + strand at 180.478 kb on - strand at 180.478 kb on - strand, within Dsui_0176 at 180.726 kb on - strand at 181.007 kb on - strand, within Dsui_0177 at 181.034 kb on + strand, within Dsui_0177 at 181.145 kb on - strand, within Dsui_0177 at 181.184 kb on + strand at 181.184 kb on + strand, within Dsui_0177 at 181.216 kb on + strand, within Dsui_0177 at 181.387 kb on - strand, within Dsui_0177 at 181.390 kb on + strand at 181.398 kb on - strand, within Dsui_0177 at 181.467 kb on + strand, within Dsui_0177 at 181.503 kb on + strand, within Dsui_0177 at 181.511 kb on - strand, within Dsui_0177 at 181.514 kb on + strand, within Dsui_0177 at 181.564 kb on + strand at 181.643 kb on + strand at 181.651 kb on - strand at 181.653 kb on + strand at 181.704 kb on + strand at 181.716 kb on + strand at 181.774 kb on - strand, within Dsui_0178 at 181.829 kb on - strand at 181.861 kb on + strand, within Dsui_0178 at 181.869 kb on - strand, within Dsui_0178 at 182.114 kb on + strand, within Dsui_0178 at 182.191 kb on + strand, within Dsui_0178 at 182.191 kb on + strand, within Dsui_0178 at 182.280 kb on + strand, within Dsui_0178 at 182.546 kb on + strand, within Dsui_0179 at 182.546 kb on + strand, within Dsui_0179
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 179,776 + -1.7 179,840 + -0.5 179,851 - -0.1 179,930 + +0.9 180,027 - +0.9 180,077 + Dsui_0176 0.27 -0.3 180,195 + Dsui_0176 0.44 +2.5 180,288 - Dsui_0176 0.57 -1.9 180,365 - +0.9 180,403 - Dsui_0176 0.74 +1.5 180,470 + Dsui_0176 0.83 -0.5 180,470 + +0.9 180,478 - +2.7 180,478 - Dsui_0176 0.84 -1.3 180,726 - +0.9 181,007 - Dsui_0177 0.28 -2.2 181,034 + Dsui_0177 0.31 -1.1 181,145 - Dsui_0177 0.44 -1.5 181,184 + +0.9 181,184 + Dsui_0177 0.48 -3.0 181,216 + Dsui_0177 0.52 -0.9 181,387 - Dsui_0177 0.71 -0.3 181,390 + -1.4 181,398 - Dsui_0177 0.72 +0.0 181,467 + Dsui_0177 0.80 -0.1 181,503 + Dsui_0177 0.84 -0.4 181,511 - Dsui_0177 0.85 +0.9 181,514 + Dsui_0177 0.85 -2.1 181,564 + +1.0 181,643 + -1.3 181,651 - -0.5 181,653 + +0.9 181,704 + +2.4 181,716 + +1.9 181,774 - Dsui_0178 0.12 -2.9 181,829 - +0.9 181,861 + Dsui_0178 0.23 +0.2 181,869 - Dsui_0178 0.24 +0.9 182,114 + Dsui_0178 0.53 +2.2 182,191 + Dsui_0178 0.62 +0.7 182,191 + Dsui_0178 0.62 +1.1 182,280 + Dsui_0178 0.73 -0.5 182,546 + Dsui_0179 0.23 -0.3 182,546 + Dsui_0179 0.23 -1.8
Or see this region's nucleotide sequence