Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0101 and Dsui_0102 are separated by 45 nucleotides Dsui_0102 and Dsui_0103 are separated by 359 nucleotides
Dsui_0101: Dsui_0101 - exonuclease, DNA polymerase III, epsilon subunit family, at 99,453 to 100,919
_0101
Dsui_0102: Dsui_0102 - transcription elongation factor, at 100,965 to 101,414
_0102
Dsui_0103: Dsui_0103 - transcriptional regulator, at 101,774 to 102,364
_0103
Position (kb) 100
101
102 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 100.002 kb on - strand, within Dsui_0101 at 100.004 kb on + strand, within Dsui_0101 at 100.012 kb on - strand, within Dsui_0101 at 100.024 kb on + strand, within Dsui_0101 at 100.032 kb on - strand, within Dsui_0101 at 100.032 kb on - strand, within Dsui_0101 at 100.096 kb on + strand, within Dsui_0101 at 100.104 kb on - strand, within Dsui_0101 at 100.204 kb on - strand, within Dsui_0101 at 100.211 kb on + strand, within Dsui_0101 at 100.240 kb on - strand, within Dsui_0101 at 100.269 kb on - strand, within Dsui_0101 at 100.349 kb on + strand, within Dsui_0101 at 100.357 kb on + strand, within Dsui_0101 at 100.443 kb on - strand, within Dsui_0101 at 100.483 kb on + strand, within Dsui_0101 at 100.483 kb on + strand, within Dsui_0101 at 100.504 kb on + strand, within Dsui_0101 at 100.504 kb on + strand, within Dsui_0101 at 100.542 kb on - strand, within Dsui_0101 at 100.559 kb on - strand, within Dsui_0101 at 100.564 kb on - strand, within Dsui_0101 at 100.579 kb on - strand, within Dsui_0101 at 100.635 kb on - strand, within Dsui_0101 at 100.635 kb on - strand, within Dsui_0101 at 100.647 kb on - strand, within Dsui_0101 at 100.657 kb on - strand, within Dsui_0101 at 100.673 kb on + strand, within Dsui_0101 at 100.673 kb on + strand, within Dsui_0101 at 100.691 kb on - strand, within Dsui_0101 at 100.723 kb on + strand, within Dsui_0101 at 100.745 kb on + strand, within Dsui_0101 at 100.745 kb on + strand, within Dsui_0101 at 100.750 kb on + strand, within Dsui_0101 at 100.765 kb on - strand, within Dsui_0101 at 100.779 kb on + strand at 100.787 kb on - strand at 100.787 kb on - strand at 100.835 kb on + strand at 100.838 kb on + strand at 100.840 kb on + strand at 101.100 kb on + strand, within Dsui_0102 at 101.108 kb on - strand, within Dsui_0102 at 101.143 kb on + strand, within Dsui_0102 at 101.187 kb on + strand, within Dsui_0102 at 101.187 kb on + strand, within Dsui_0102 at 101.190 kb on + strand, within Dsui_0102 at 101.351 kb on - strand, within Dsui_0102 at 101.354 kb on + strand, within Dsui_0102 at 101.364 kb on + strand at 101.406 kb on - strand at 101.409 kb on + strand at 101.422 kb on + strand at 101.430 kb on - strand at 101.724 kb on - strand at 101.806 kb on + strand at 101.878 kb on - strand, within Dsui_0103 at 101.931 kb on - strand, within Dsui_0103 at 101.972 kb on + strand, within Dsui_0103 at 102.071 kb on - strand, within Dsui_0103 at 102.076 kb on - strand, within Dsui_0103 at 102.157 kb on + strand at 102.168 kb on + strand at 102.176 kb on - strand, within Dsui_0103 at 102.186 kb on - strand, within Dsui_0103 at 102.223 kb on + strand at 102.352 kb on - strand at 102.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 100,002 - Dsui_0101 0.37 -0.8 100,004 + Dsui_0101 0.38 +1.4 100,012 - Dsui_0101 0.38 +0.2 100,024 + Dsui_0101 0.39 -0.7 100,032 - Dsui_0101 0.39 +0.1 100,032 - Dsui_0101 0.39 +0.1 100,096 + Dsui_0101 0.44 -1.3 100,104 - Dsui_0101 0.44 -0.2 100,204 - Dsui_0101 0.51 +0.1 100,211 + Dsui_0101 0.52 -0.3 100,240 - Dsui_0101 0.54 +2.9 100,269 - Dsui_0101 0.56 -0.0 100,349 + Dsui_0101 0.61 -0.2 100,357 + Dsui_0101 0.62 +0.6 100,443 - Dsui_0101 0.67 -1.1 100,483 + Dsui_0101 0.70 +0.9 100,483 + Dsui_0101 0.70 -1.5 100,504 + Dsui_0101 0.72 -1.1 100,504 + Dsui_0101 0.72 +0.3 100,542 - Dsui_0101 0.74 +0.1 100,559 - Dsui_0101 0.75 -4.1 100,564 - Dsui_0101 0.76 +1.3 100,579 - Dsui_0101 0.77 +1.9 100,635 - Dsui_0101 0.81 +0.5 100,635 - Dsui_0101 0.81 +0.3 100,647 - Dsui_0101 0.81 +0.5 100,657 - Dsui_0101 0.82 -0.4 100,673 + Dsui_0101 0.83 -0.6 100,673 + Dsui_0101 0.83 -0.0 100,691 - Dsui_0101 0.84 -0.4 100,723 + Dsui_0101 0.87 -0.4 100,745 + Dsui_0101 0.88 -1.4 100,745 + Dsui_0101 0.88 +0.5 100,750 + Dsui_0101 0.88 -1.1 100,765 - Dsui_0101 0.89 +0.9 100,779 + -0.4 100,787 - +0.9 100,787 - +0.5 100,835 + -0.2 100,838 + +0.1 100,840 + -0.2 101,100 + Dsui_0102 0.30 -0.5 101,108 - Dsui_0102 0.32 -0.8 101,143 + Dsui_0102 0.40 +2.5 101,187 + Dsui_0102 0.49 +2.5 101,187 + Dsui_0102 0.49 -0.7 101,190 + Dsui_0102 0.50 -1.9 101,351 - Dsui_0102 0.86 -0.7 101,354 + Dsui_0102 0.86 -1.5 101,364 + +2.5 101,406 - -1.0 101,409 + -3.1 101,422 + +0.6 101,430 - -1.9 101,724 - +0.4 101,806 + -0.6 101,878 - Dsui_0103 0.18 -0.5 101,931 - Dsui_0103 0.27 +0.5 101,972 + Dsui_0103 0.34 +1.0 102,071 - Dsui_0103 0.50 -1.1 102,076 - Dsui_0103 0.51 -0.6 102,157 + -2.2 102,168 + -1.1 102,176 - Dsui_0103 0.68 -0.1 102,186 - Dsui_0103 0.70 -0.5 102,223 + +1.4 102,352 - +0.6 102,368 - +0.9
Or see this region's nucleotide sequence