Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3984

Experiment: Dino_ML3_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3983 and Dshi_3984 are separated by 187 nucleotidesDshi_3984 and Dshi_3985 are separated by 12 nucleotides Dshi_3983: Dshi_3983 - type II secretion system protein E (RefSeq), at 41,929 to 42,915 _3983 Dshi_3984: Dshi_3984 - hypothetical protein (RefSeq), at 43,103 to 43,513 _3984 Dshi_3985: Dshi_3985 - TrbL/VirB6 plasmid conjugal transfer protein (RefSeq), at 43,526 to 44,602 _3985 Position (kb) 43 44Strain fitness (log2 ratio) -1 0 1at 42.133 kb on - strand, within Dshi_3983at 42.178 kb on - strand, within Dshi_3983at 42.178 kb on - strand, within Dshi_3983at 42.364 kb on + strand, within Dshi_3983at 42.392 kb on - strand, within Dshi_3983at 42.492 kb on + strand, within Dshi_3983at 42.607 kb on - strand, within Dshi_3983at 42.665 kb on + strand, within Dshi_3983at 42.747 kb on - strand, within Dshi_3983at 42.760 kb on + strand, within Dshi_3983at 42.791 kb on - strand, within Dshi_3983at 42.807 kb on - strand, within Dshi_3983at 42.993 kb on - strandat 42.993 kb on - strandat 43.008 kb on - strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.081 kb on - strandat 43.351 kb on + strand, within Dshi_3984at 43.376 kb on + strand, within Dshi_3984at 43.485 kb on - strandat 43.510 kb on - strandat 43.556 kb on + strandat 43.569 kb on - strandat 43.588 kb on - strandat 43.591 kb on + strandat 43.599 kb on - strandat 43.605 kb on + strandat 43.620 kb on - strandat 43.628 kb on + strandat 43.646 kb on + strand, within Dshi_3985at 43.765 kb on + strand, within Dshi_3985at 43.765 kb on + strand, within Dshi_3985at 43.785 kb on - strand, within Dshi_3985at 43.790 kb on + strand, within Dshi_3985at 43.800 kb on - strand, within Dshi_3985at 43.814 kb on - strand, within Dshi_3985at 43.815 kb on - strand, within Dshi_3985at 43.853 kb on - strand, within Dshi_3985at 43.853 kb on - strand, within Dshi_3985at 43.853 kb on - strand, within Dshi_3985at 43.936 kb on - strand, within Dshi_3985at 43.942 kb on + strand, within Dshi_3985at 43.952 kb on + strand, within Dshi_3985at 44.012 kb on - strand, within Dshi_3985at 44.026 kb on + strand, within Dshi_3985at 44.044 kb on + strand, within Dshi_3985at 44.143 kb on - strand, within Dshi_3985at 44.162 kb on - strandat 44.181 kb on - strand, within Dshi_3985at 44.342 kb on - strand, within Dshi_3985at 44.352 kb on - strand, within Dshi_3985at 44.352 kb on - strand, within Dshi_3985at 44.393 kb on + strand, within Dshi_3985at 44.402 kb on - strand, within Dshi_3985at 44.445 kb on + strand, within Dshi_3985at 44.452 kb on + strand, within Dshi_3985at 44.460 kb on - strand, within Dshi_3985at 44.490 kb on - strand, within Dshi_3985at 44.501 kb on + strandat 44.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dino_ML3_MIT diversity barseq
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42,133 - Dshi_3983 0.21 -0.6
42,178 - Dshi_3983 0.25 +0.0
42,178 - Dshi_3983 0.25 -0.1
42,364 + Dshi_3983 0.44 -0.8
42,392 - Dshi_3983 0.47 -0.2
42,492 + Dshi_3983 0.57 -0.6
42,607 - Dshi_3983 0.69 -0.6
42,665 + Dshi_3983 0.75 -0.1
42,747 - Dshi_3983 0.83 +0.3
42,760 + Dshi_3983 0.84 -0.2
42,791 - Dshi_3983 0.87 -0.1
42,807 - Dshi_3983 0.89 +0.8
42,993 - +1.1
42,993 - +0.5
43,008 - +0.6
43,009 + +0.2
43,009 + +0.1
43,009 + +0.7
43,009 + +0.3
43,009 + +0.3
43,081 - +0.3
43,351 + Dshi_3984 0.60 -1.0
43,376 + Dshi_3984 0.66 -0.1
43,485 - +0.6
43,510 - +0.5
43,556 + +1.5
43,569 - -0.3
43,588 - +0.8
43,591 + -0.2
43,599 - +0.2
43,605 + -0.0
43,620 - -1.7
43,628 + +0.5
43,646 + Dshi_3985 0.11 +0.0
43,765 + Dshi_3985 0.22 +0.5
43,765 + Dshi_3985 0.22 +0.8
43,785 - Dshi_3985 0.24 +0.2
43,790 + Dshi_3985 0.25 -0.3
43,800 - Dshi_3985 0.25 +0.8
43,814 - Dshi_3985 0.27 +1.4
43,815 - Dshi_3985 0.27 +0.0
43,853 - Dshi_3985 0.30 +0.3
43,853 - Dshi_3985 0.30 -0.2
43,853 - Dshi_3985 0.30 -0.8
43,936 - Dshi_3985 0.38 -0.8
43,942 + Dshi_3985 0.39 +0.2
43,952 + Dshi_3985 0.40 +1.3
44,012 - Dshi_3985 0.45 -1.7
44,026 + Dshi_3985 0.46 -0.4
44,044 + Dshi_3985 0.48 +0.4
44,143 - Dshi_3985 0.57 -0.8
44,162 - -0.0
44,181 - Dshi_3985 0.61 +0.8
44,342 - Dshi_3985 0.76 -1.7
44,352 - Dshi_3985 0.77 -0.7
44,352 - Dshi_3985 0.77 +0.4
44,393 + Dshi_3985 0.81 +0.5
44,402 - Dshi_3985 0.81 -0.7
44,445 + Dshi_3985 0.85 +1.4
44,452 + Dshi_3985 0.86 +0.3
44,460 - Dshi_3985 0.87 +1.2
44,490 - Dshi_3985 0.90 -0.2
44,501 + +0.7
44,502 + +0.2

Or see this region's nucleotide sequence