Experiment: Dino_ML3_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0905 and Dshi_0906 overlap by 4 nucleotides Dshi_0906 and Dshi_0907 overlap by 4 nucleotides Dshi_0907 and Dshi_0908 overlap by 4 nucleotides Dshi_0908 and Dshi_0909 overlap by 4 nucleotides
Dshi_0905: Dshi_0905 - protein of unknown function UPF0126 (RefSeq), at 929,570 to 930,199
_0905
Dshi_0906: Dshi_0906 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 930,196 to 930,930
_0906
Dshi_0907: Dshi_0907 - ABC transporter related (RefSeq), at 930,927 to 931,655
_0907
Dshi_0908: Dshi_0908 - transcriptional activator, TenA family (RefSeq), at 931,652 to 932,350
_0908
Dshi_0909: Dshi_0909 - NMT1/THI5 like domain protein (RefSeq), at 932,347 to 933,282
_0909
Position (kb) 930
931
932 Strain fitness (log2 ratio) -1
0
1
2 at 930.151 kb on + strand at 930.151 kb on + strand at 930.159 kb on - strand at 930.252 kb on + strand at 930.299 kb on + strand, within Dshi_0906 at 930.350 kb on - strand, within Dshi_0906 at 930.374 kb on + strand, within Dshi_0906 at 930.474 kb on + strand, within Dshi_0906 at 930.562 kb on - strand, within Dshi_0906 at 930.692 kb on - strand, within Dshi_0906 at 930.866 kb on - strand at 931.091 kb on + strand, within Dshi_0907 at 931.233 kb on - strand, within Dshi_0907 at 931.442 kb on + strand, within Dshi_0907 at 931.554 kb on + strand, within Dshi_0907 at 931.631 kb on - strand at 931.887 kb on + strand, within Dshi_0908 at 931.924 kb on - strand, within Dshi_0908 at 931.999 kb on - strand, within Dshi_0908 at 932.107 kb on - strand, within Dshi_0908 at 932.145 kb on + strand, within Dshi_0908 at 932.145 kb on + strand, within Dshi_0908 at 932.153 kb on - strand, within Dshi_0908 at 932.172 kb on + strand, within Dshi_0908 at 932.446 kb on - strand, within Dshi_0909 at 932.644 kb on - strand, within Dshi_0909 at 932.651 kb on + strand, within Dshi_0909
Per-strain Table
Position Strand Gene LocusTag Fraction Dino_ML3_MIT diversity barseq remove 930,151 + +1.0 930,151 + +0.3 930,159 - +2.1 930,252 + -0.6 930,299 + Dshi_0906 0.14 -1.2 930,350 - Dshi_0906 0.21 -0.4 930,374 + Dshi_0906 0.24 -0.5 930,474 + Dshi_0906 0.38 +1.1 930,562 - Dshi_0906 0.50 +0.0 930,692 - Dshi_0906 0.67 +0.2 930,866 - -0.3 931,091 + Dshi_0907 0.22 +0.2 931,233 - Dshi_0907 0.42 -1.5 931,442 + Dshi_0907 0.71 -0.1 931,554 + Dshi_0907 0.86 +0.1 931,631 - +0.4 931,887 + Dshi_0908 0.34 -0.2 931,924 - Dshi_0908 0.39 -0.2 931,999 - Dshi_0908 0.50 -0.9 932,107 - Dshi_0908 0.65 -0.3 932,145 + Dshi_0908 0.71 +0.3 932,145 + Dshi_0908 0.71 +0.2 932,153 - Dshi_0908 0.72 -0.1 932,172 + Dshi_0908 0.74 +0.6 932,446 - Dshi_0909 0.11 +0.4 932,644 - Dshi_0909 0.32 +1.1 932,651 + Dshi_0909 0.32 +0.2
Or see this region's nucleotide sequence