Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0881

Experiment: Dino_ML3_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0880 and Dshi_0881 are separated by 146 nucleotidesDshi_0881 and Dshi_0882 are separated by 1 nucleotidesDshi_0882 and Dshi_0883 are separated by 4 nucleotides Dshi_0880: Dshi_0880 - Hydratase/decarboxylase (RefSeq), at 895,664 to 896,512 _0880 Dshi_0881: Dshi_0881 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 896,659 to 897,645 _0881 Dshi_0882: Dshi_0882 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 897,647 to 898,615 _0882 Dshi_0883: Dshi_0883 - hypothetical protein (RefSeq), at 898,620 to 898,811 _0883 Position (kb) 896 897 898Strain fitness (log2 ratio) -2 -1 0 1at 895.680 kb on + strandat 895.692 kb on + strandat 895.700 kb on - strandat 895.702 kb on + strandat 895.710 kb on - strandat 895.735 kb on - strandat 895.786 kb on - strand, within Dshi_0880at 895.789 kb on + strand, within Dshi_0880at 895.796 kb on + strand, within Dshi_0880at 895.797 kb on - strand, within Dshi_0880at 895.814 kb on - strand, within Dshi_0880at 895.837 kb on - strand, within Dshi_0880at 895.849 kb on - strand, within Dshi_0880at 895.849 kb on - strand, within Dshi_0880at 895.898 kb on - strand, within Dshi_0880at 895.898 kb on - strand, within Dshi_0880at 895.983 kb on + strand, within Dshi_0880at 895.991 kb on - strand, within Dshi_0880at 896.036 kb on + strand, within Dshi_0880at 896.039 kb on - strand, within Dshi_0880at 896.107 kb on - strand, within Dshi_0880at 896.107 kb on - strand, within Dshi_0880at 896.138 kb on + strand, within Dshi_0880at 896.169 kb on + strand, within Dshi_0880at 896.177 kb on - strand, within Dshi_0880at 896.182 kb on - strand, within Dshi_0880at 896.182 kb on - strand, within Dshi_0880at 896.185 kb on + strand, within Dshi_0880at 896.273 kb on + strand, within Dshi_0880at 896.286 kb on - strand, within Dshi_0880at 896.297 kb on - strand, within Dshi_0880at 896.301 kb on - strand, within Dshi_0880at 896.331 kb on + strand, within Dshi_0880at 896.368 kb on + strand, within Dshi_0880at 896.429 kb on - strandat 896.449 kb on - strandat 896.463 kb on - strandat 896.468 kb on - strandat 896.472 kb on - strandat 896.490 kb on + strandat 896.525 kb on - strandat 896.544 kb on + strandat 896.589 kb on + strandat 896.604 kb on + strandat 896.611 kb on - strandat 896.648 kb on + strandat 896.706 kb on + strandat 896.709 kb on - strandat 896.719 kb on - strandat 896.817 kb on + strand, within Dshi_0881at 896.972 kb on - strand, within Dshi_0881at 896.972 kb on - strand, within Dshi_0881at 896.972 kb on - strand, within Dshi_0881at 897.309 kb on + strand, within Dshi_0881at 897.375 kb on + strand, within Dshi_0881at 897.381 kb on - strand, within Dshi_0881at 897.473 kb on + strand, within Dshi_0881at 897.541 kb on - strand, within Dshi_0881at 897.777 kb on - strand, within Dshi_0882at 897.863 kb on - strand, within Dshi_0882at 897.891 kb on + strand, within Dshi_0882at 897.940 kb on + strand, within Dshi_0882at 898.029 kb on + strand, within Dshi_0882at 898.031 kb on - strand, within Dshi_0882at 898.065 kb on + strand, within Dshi_0882at 898.228 kb on - strand, within Dshi_0882at 898.262 kb on + strand, within Dshi_0882at 898.317 kb on + strand, within Dshi_0882at 898.351 kb on - strand, within Dshi_0882at 898.562 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dino_ML3_MIT diversity barseq
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895,680 + -0.0
895,692 + +0.4
895,700 - -0.2
895,702 + +0.2
895,710 - -0.2
895,735 - +1.1
895,786 - Dshi_0880 0.14 +1.0
895,789 + Dshi_0880 0.15 +0.3
895,796 + Dshi_0880 0.16 -0.0
895,797 - Dshi_0880 0.16 +0.0
895,814 - Dshi_0880 0.18 +0.5
895,837 - Dshi_0880 0.20 -0.9
895,849 - Dshi_0880 0.22 -0.1
895,849 - Dshi_0880 0.22 +0.0
895,898 - Dshi_0880 0.28 -0.7
895,898 - Dshi_0880 0.28 -0.3
895,983 + Dshi_0880 0.38 -0.7
895,991 - Dshi_0880 0.39 +0.6
896,036 + Dshi_0880 0.44 +0.4
896,039 - Dshi_0880 0.44 +1.2
896,107 - Dshi_0880 0.52 -0.7
896,107 - Dshi_0880 0.52 +0.5
896,138 + Dshi_0880 0.56 +0.1
896,169 + Dshi_0880 0.59 +0.4
896,177 - Dshi_0880 0.60 -0.2
896,182 - Dshi_0880 0.61 +0.4
896,182 - Dshi_0880 0.61 -0.6
896,185 + Dshi_0880 0.61 -0.2
896,273 + Dshi_0880 0.72 -0.2
896,286 - Dshi_0880 0.73 +0.5
896,297 - Dshi_0880 0.75 +0.2
896,301 - Dshi_0880 0.75 -0.0
896,331 + Dshi_0880 0.79 +0.7
896,368 + Dshi_0880 0.83 +0.1
896,429 - -0.0
896,449 - +1.2
896,463 - +0.1
896,468 - -1.6
896,472 - -0.8
896,490 + +0.1
896,525 - +0.8
896,544 + +0.5
896,589 + -0.0
896,604 + -1.0
896,611 - +0.1
896,648 + -0.4
896,706 + +1.7
896,709 - -0.0
896,719 - +1.1
896,817 + Dshi_0881 0.16 +0.9
896,972 - Dshi_0881 0.32 -0.9
896,972 - Dshi_0881 0.32 -0.4
896,972 - Dshi_0881 0.32 -0.8
897,309 + Dshi_0881 0.66 +0.0
897,375 + Dshi_0881 0.73 -0.4
897,381 - Dshi_0881 0.73 +0.2
897,473 + Dshi_0881 0.82 -0.4
897,541 - Dshi_0881 0.89 +1.1
897,777 - Dshi_0882 0.13 -1.2
897,863 - Dshi_0882 0.22 -0.0
897,891 + Dshi_0882 0.25 +1.0
897,940 + Dshi_0882 0.30 +0.2
898,029 + Dshi_0882 0.39 -1.8
898,031 - Dshi_0882 0.40 -0.0
898,065 + Dshi_0882 0.43 +0.3
898,228 - Dshi_0882 0.60 +0.6
898,262 + Dshi_0882 0.63 -0.4
898,317 + Dshi_0882 0.69 -0.3
898,351 - Dshi_0882 0.73 -0.6
898,562 - -0.3

Or see this region's nucleotide sequence