Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0708

Experiment: Dino_ML3_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0707 and Dshi_0708 are separated by 5 nucleotidesDshi_0708 and Dshi_0709 are separated by 471 nucleotides Dshi_0707: Dshi_0707 - hypothetical protein (RefSeq), at 714,601 to 715,269 _0707 Dshi_0708: Dshi_0708 - hypothetical protein (RefSeq), at 715,275 to 716,246 _0708 Dshi_0709: Dshi_0709 - coenzyme A transferase (RefSeq), at 716,718 to 718,664 _0709 Position (kb) 715 716 717Strain fitness (log2 ratio) -3 -2 -1 0 1at 714.359 kb on - strandat 714.414 kb on + strandat 714.414 kb on + strandat 714.422 kb on - strandat 714.468 kb on + strandat 714.473 kb on + strandat 714.522 kb on - strandat 714.527 kb on - strandat 714.605 kb on + strandat 714.681 kb on + strand, within Dshi_0707at 714.739 kb on - strand, within Dshi_0707at 714.809 kb on + strand, within Dshi_0707at 714.865 kb on + strand, within Dshi_0707at 714.917 kb on - strand, within Dshi_0707at 715.052 kb on + strand, within Dshi_0707at 715.139 kb on + strand, within Dshi_0707at 715.161 kb on + strand, within Dshi_0707at 715.213 kb on + strandat 715.251 kb on + strandat 715.368 kb on - strandat 715.480 kb on + strand, within Dshi_0708at 715.493 kb on + strand, within Dshi_0708at 715.512 kb on - strand, within Dshi_0708at 715.521 kb on - strand, within Dshi_0708at 715.546 kb on + strand, within Dshi_0708at 715.582 kb on + strand, within Dshi_0708at 715.631 kb on + strand, within Dshi_0708at 715.770 kb on + strand, within Dshi_0708at 715.822 kb on + strand, within Dshi_0708at 715.836 kb on + strand, within Dshi_0708at 715.946 kb on + strand, within Dshi_0708at 716.054 kb on + strand, within Dshi_0708at 716.142 kb on - strand, within Dshi_0708at 716.146 kb on - strand, within Dshi_0708at 716.152 kb on - strandat 716.157 kb on + strandat 716.157 kb on - strandat 716.211 kb on - strandat 716.652 kb on + strandat 716.692 kb on - strandat 716.698 kb on + strandat 716.706 kb on - strandat 716.832 kb on + strandat 716.863 kb on + strandat 716.898 kb on + strandat 716.988 kb on - strand, within Dshi_0709at 716.999 kb on + strand, within Dshi_0709at 717.002 kb on - strand, within Dshi_0709at 717.032 kb on + strand, within Dshi_0709at 717.088 kb on - strand, within Dshi_0709at 717.104 kb on + strand, within Dshi_0709at 717.110 kb on - strand, within Dshi_0709at 717.136 kb on - strand, within Dshi_0709at 717.157 kb on + strand, within Dshi_0709at 717.206 kb on + strand, within Dshi_0709at 717.214 kb on - strand, within Dshi_0709at 717.235 kb on - strand, within Dshi_0709

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Per-strain Table

Position Strand Gene LocusTag Fraction Dino_ML3_MIT diversity barseq
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714,359 - -1.0
714,414 + +0.1
714,414 + -0.0
714,422 - -0.2
714,468 + -0.4
714,473 + -0.7
714,522 - -0.5
714,527 - -0.5
714,605 + +0.5
714,681 + Dshi_0707 0.12 -0.5
714,739 - Dshi_0707 0.21 +0.1
714,809 + Dshi_0707 0.31 -0.2
714,865 + Dshi_0707 0.39 +0.0
714,917 - Dshi_0707 0.47 -0.8
715,052 + Dshi_0707 0.67 +0.2
715,139 + Dshi_0707 0.80 -1.0
715,161 + Dshi_0707 0.84 +0.8
715,213 + +0.6
715,251 + -0.7
715,368 - -0.1
715,480 + Dshi_0708 0.21 -1.6
715,493 + Dshi_0708 0.22 +0.5
715,512 - Dshi_0708 0.24 -1.0
715,521 - Dshi_0708 0.25 +0.0
715,546 + Dshi_0708 0.28 -0.3
715,582 + Dshi_0708 0.32 -0.3
715,631 + Dshi_0708 0.37 +0.2
715,770 + Dshi_0708 0.51 +0.2
715,822 + Dshi_0708 0.56 -0.6
715,836 + Dshi_0708 0.58 -0.6
715,946 + Dshi_0708 0.69 -0.2
716,054 + Dshi_0708 0.80 +0.6
716,142 - Dshi_0708 0.89 -0.8
716,146 - Dshi_0708 0.90 -0.4
716,152 - -0.2
716,157 + +0.7
716,157 - -0.1
716,211 - -3.1
716,652 + -0.4
716,692 - -0.6
716,698 + +0.4
716,706 - -0.3
716,832 + +1.0
716,863 + +0.0
716,898 + +0.3
716,988 - Dshi_0709 0.14 +0.3
716,999 + Dshi_0709 0.14 +0.1
717,002 - Dshi_0709 0.15 +0.1
717,032 + Dshi_0709 0.16 +0.5
717,088 - Dshi_0709 0.19 +0.3
717,104 + Dshi_0709 0.20 +0.7
717,110 - Dshi_0709 0.20 -0.2
717,136 - Dshi_0709 0.21 +0.0
717,157 + Dshi_0709 0.23 -0.0
717,206 + Dshi_0709 0.25 +0.2
717,214 - Dshi_0709 0.25 +0.8
717,235 - Dshi_0709 0.27 +0.3

Or see this region's nucleotide sequence