Experiment: Dino_ML3_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0633 and Dshi_0634 are separated by 204 nucleotides Dshi_0634 and Dshi_0635 are separated by 2 nucleotides
Dshi_0633: Dshi_0633 - Phosphate butyryltransferase (RefSeq), at 630,977 to 632,392
_0633
Dshi_0634: Dshi_0634 - glycosyltransferase, putative (RefSeq), at 632,597 to 633,406
_0634
Dshi_0635: Dshi_0635 - cyclic nucleotide-binding (RefSeq), at 633,409 to 635,610
_0635
Position (kb) 632
633
634 Strain fitness (log2 ratio) -1
0
1
2 at 631.647 kb on + strand, within Dshi_0633 at 631.653 kb on + strand, within Dshi_0633 at 631.815 kb on - strand, within Dshi_0633 at 631.876 kb on + strand, within Dshi_0633 at 631.928 kb on - strand, within Dshi_0633 at 631.986 kb on - strand, within Dshi_0633 at 632.122 kb on - strand, within Dshi_0633 at 632.157 kb on - strand, within Dshi_0633 at 632.287 kb on + strand at 632.287 kb on + strand at 632.336 kb on + strand at 632.336 kb on + strand at 632.344 kb on - strand at 632.344 kb on - strand at 632.344 kb on - strand at 632.356 kb on - strand at 632.413 kb on + strand at 632.446 kb on + strand at 632.545 kb on + strand at 632.621 kb on - strand at 632.655 kb on - strand at 632.677 kb on + strand at 632.700 kb on - strand, within Dshi_0634 at 632.756 kb on - strand, within Dshi_0634 at 632.798 kb on - strand, within Dshi_0634 at 632.921 kb on - strand, within Dshi_0634 at 632.947 kb on + strand, within Dshi_0634 at 632.996 kb on - strand, within Dshi_0634 at 633.037 kb on + strand, within Dshi_0634 at 633.202 kb on - strand, within Dshi_0634 at 633.212 kb on - strand, within Dshi_0634 at 633.403 kb on - strand at 633.408 kb on - strand at 633.519 kb on + strand at 633.586 kb on + strand at 633.589 kb on - strand at 633.591 kb on + strand at 633.591 kb on + strand at 633.616 kb on + strand at 634.123 kb on + strand at 634.131 kb on - strand, within Dshi_0635 at 634.131 kb on - strand, within Dshi_0635 at 634.188 kb on + strand, within Dshi_0635 at 634.203 kb on - strand, within Dshi_0635 at 634.344 kb on + strand, within Dshi_0635
Per-strain Table
Position Strand Gene LocusTag Fraction Dino_ML3_MIT diversity barseq remove 631,647 + Dshi_0633 0.47 +1.4 631,653 + Dshi_0633 0.48 +0.9 631,815 - Dshi_0633 0.59 -0.2 631,876 + Dshi_0633 0.63 -1.1 631,928 - Dshi_0633 0.67 +0.4 631,986 - Dshi_0633 0.71 +0.4 632,122 - Dshi_0633 0.81 +1.6 632,157 - Dshi_0633 0.83 -0.4 632,287 + -0.2 632,287 + +1.1 632,336 + +0.3 632,336 + +0.6 632,344 - -0.1 632,344 - +0.4 632,344 - +1.4 632,356 - +0.7 632,413 + +0.3 632,446 + +1.2 632,545 + +1.9 632,621 - -0.3 632,655 - +0.2 632,677 + +0.2 632,700 - Dshi_0634 0.13 +0.2 632,756 - Dshi_0634 0.20 +0.9 632,798 - Dshi_0634 0.25 -0.1 632,921 - Dshi_0634 0.40 -1.1 632,947 + Dshi_0634 0.43 -0.2 632,996 - Dshi_0634 0.49 -0.8 633,037 + Dshi_0634 0.54 -0.6 633,202 - Dshi_0634 0.75 +0.4 633,212 - Dshi_0634 0.76 -0.8 633,403 - +0.1 633,408 - -0.2 633,519 + +0.5 633,586 + +0.3 633,589 - +0.5 633,591 + +0.4 633,591 + +1.1 633,616 + +0.4 634,123 + -0.5 634,131 - Dshi_0635 0.33 +0.2 634,131 - Dshi_0635 0.33 +0.3 634,188 + Dshi_0635 0.35 -0.3 634,203 - Dshi_0635 0.36 +0.3 634,344 + Dshi_0635 0.42 -0.4
Or see this region's nucleotide sequence