Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0532

Experiment: Dino_ML3_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0531 and Dshi_0532 are separated by 223 nucleotidesDshi_0532 and Dshi_0533 overlap by 1 nucleotidesDshi_0533 and Dshi_0534 are separated by 22 nucleotides Dshi_0531: Dshi_0531 - ABC sugar transporter, periplasmic ligand binding protein (RefSeq), at 515,852 to 516,841 _0531 Dshi_0532: Dshi_0532 - transcriptional regulator, DeoR family (RefSeq), at 517,065 to 518,039 _0532 Dshi_0533: Dshi_0533 - Xylose isomerase domain protein TIM barrel (RefSeq), at 518,039 to 518,887 _0533 Dshi_0534: Dshi_0534 - dehydrogenase E1 component (RefSeq), at 518,910 to 519,929 _0534 Position (kb) 517 518 519Strain fitness (log2 ratio) -2 -1 0 1 2at 516.119 kb on + strand, within Dshi_0531at 516.234 kb on + strand, within Dshi_0531at 516.242 kb on - strand, within Dshi_0531at 516.262 kb on - strand, within Dshi_0531at 516.325 kb on + strand, within Dshi_0531at 516.345 kb on + strand, within Dshi_0531at 516.396 kb on + strand, within Dshi_0531at 516.527 kb on + strand, within Dshi_0531at 516.535 kb on - strand, within Dshi_0531at 516.585 kb on - strand, within Dshi_0531at 516.593 kb on - strand, within Dshi_0531at 516.649 kb on + strand, within Dshi_0531at 516.750 kb on + strandat 516.776 kb on - strandat 516.776 kb on - strandat 516.815 kb on + strandat 516.815 kb on + strandat 516.815 kb on + strandat 516.823 kb on - strandat 516.848 kb on - strandat 516.899 kb on - strandat 516.946 kb on - strandat 516.951 kb on + strandat 516.951 kb on - strandat 517.069 kb on - strandat 517.089 kb on + strandat 517.141 kb on + strandat 517.175 kb on + strand, within Dshi_0532at 517.210 kb on + strand, within Dshi_0532at 517.218 kb on - strand, within Dshi_0532at 517.282 kb on - strand, within Dshi_0532at 517.595 kb on - strand, within Dshi_0532at 517.650 kb on + strand, within Dshi_0532at 517.695 kb on + strand, within Dshi_0532at 517.703 kb on - strand, within Dshi_0532at 517.713 kb on - strand, within Dshi_0532at 517.736 kb on + strand, within Dshi_0532at 517.751 kb on + strand, within Dshi_0532at 517.812 kb on - strand, within Dshi_0532at 517.824 kb on + strand, within Dshi_0532at 517.872 kb on - strand, within Dshi_0532at 517.930 kb on + strand, within Dshi_0532at 517.942 kb on + strandat 517.942 kb on + strandat 517.950 kb on + strandat 517.950 kb on - strandat 517.995 kb on - strandat 518.007 kb on - strandat 518.022 kb on - strandat 518.031 kb on + strandat 518.079 kb on + strandat 518.087 kb on - strandat 518.091 kb on - strandat 518.091 kb on - strandat 518.091 kb on - strandat 518.091 kb on - strandat 518.116 kb on + strandat 518.117 kb on + strandat 518.124 kb on - strand, within Dshi_0533at 518.124 kb on - strand, within Dshi_0533at 518.161 kb on - strand, within Dshi_0533at 518.175 kb on - strand, within Dshi_0533at 518.275 kb on - strand, within Dshi_0533at 518.292 kb on + strand, within Dshi_0533at 518.322 kb on + strand, within Dshi_0533at 518.363 kb on - strand, within Dshi_0533at 518.414 kb on + strand, within Dshi_0533at 518.437 kb on + strand, within Dshi_0533at 518.497 kb on + strand, within Dshi_0533at 518.525 kb on - strand, within Dshi_0533at 518.541 kb on + strand, within Dshi_0533at 518.546 kb on + strand, within Dshi_0533at 518.571 kb on - strand, within Dshi_0533at 518.599 kb on - strand, within Dshi_0533at 518.635 kb on + strand, within Dshi_0533at 518.665 kb on + strand, within Dshi_0533at 518.672 kb on + strand, within Dshi_0533at 518.685 kb on - strand, within Dshi_0533at 518.755 kb on - strand, within Dshi_0533at 518.811 kb on + strandat 518.849 kb on + strandat 518.881 kb on + strandat 518.892 kb on + strandat 518.910 kb on - strandat 518.934 kb on - strandat 518.935 kb on - strandat 518.982 kb on + strandat 518.987 kb on + strandat 518.999 kb on - strandat 519.018 kb on - strand, within Dshi_0534at 519.021 kb on - strand, within Dshi_0534

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Per-strain Table

Position Strand Gene LocusTag Fraction Dino_ML3_MIT diversity barseq
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516,119 + Dshi_0531 0.27 +0.1
516,234 + Dshi_0531 0.39 +0.7
516,242 - Dshi_0531 0.39 -0.4
516,262 - Dshi_0531 0.41 -0.2
516,325 + Dshi_0531 0.48 +0.3
516,345 + Dshi_0531 0.50 -0.5
516,396 + Dshi_0531 0.55 -1.4
516,527 + Dshi_0531 0.68 +0.7
516,535 - Dshi_0531 0.69 -0.1
516,585 - Dshi_0531 0.74 -0.6
516,593 - Dshi_0531 0.75 +0.3
516,649 + Dshi_0531 0.81 -1.6
516,750 + +0.5
516,776 - -0.4
516,776 - -0.3
516,815 + +1.0
516,815 + +0.6
516,815 + -0.2
516,823 - -0.5
516,848 - +2.6
516,899 - -0.2
516,946 - +0.9
516,951 + -0.4
516,951 - -0.5
517,069 - +0.1
517,089 + +1.0
517,141 + -0.3
517,175 + Dshi_0532 0.11 +0.3
517,210 + Dshi_0532 0.15 -0.5
517,218 - Dshi_0532 0.16 +0.2
517,282 - Dshi_0532 0.22 -0.7
517,595 - Dshi_0532 0.54 -1.2
517,650 + Dshi_0532 0.60 +0.0
517,695 + Dshi_0532 0.65 +0.1
517,703 - Dshi_0532 0.65 -0.0
517,713 - Dshi_0532 0.66 +0.0
517,736 + Dshi_0532 0.69 +1.6
517,751 + Dshi_0532 0.70 +0.0
517,812 - Dshi_0532 0.77 -1.4
517,824 + Dshi_0532 0.78 -1.0
517,872 - Dshi_0532 0.83 +0.8
517,930 + Dshi_0532 0.89 -0.8
517,942 + -0.4
517,942 + +0.0
517,950 + +1.0
517,950 - +0.3
517,995 - +0.2
518,007 - -0.0
518,022 - -1.4
518,031 + -0.6
518,079 + +0.1
518,087 - -0.6
518,091 - -0.1
518,091 - -0.2
518,091 - +0.3
518,091 - -0.0
518,116 + -0.2
518,117 + +0.6
518,124 - Dshi_0533 0.10 +0.7
518,124 - Dshi_0533 0.10 -0.2
518,161 - Dshi_0533 0.14 -0.2
518,175 - Dshi_0533 0.16 +0.6
518,275 - Dshi_0533 0.28 -0.4
518,292 + Dshi_0533 0.30 -2.0
518,322 + Dshi_0533 0.33 -1.4
518,363 - Dshi_0533 0.38 +0.2
518,414 + Dshi_0533 0.44 -1.2
518,437 + Dshi_0533 0.47 +0.1
518,497 + Dshi_0533 0.54 -0.5
518,525 - Dshi_0533 0.57 +0.4
518,541 + Dshi_0533 0.59 +0.4
518,546 + Dshi_0533 0.60 +0.2
518,571 - Dshi_0533 0.63 +1.6
518,599 - Dshi_0533 0.66 -0.3
518,635 + Dshi_0533 0.70 +0.1
518,665 + Dshi_0533 0.74 +0.9
518,672 + Dshi_0533 0.75 +0.4
518,685 - Dshi_0533 0.76 -1.4
518,755 - Dshi_0533 0.84 -0.5
518,811 + +1.3
518,849 + +0.0
518,881 + +0.9
518,892 + +0.3
518,910 - -1.5
518,934 - -0.6
518,935 - +0.0
518,982 + +0.1
518,987 + +0.3
518,999 - +0.9
519,018 - Dshi_0534 0.11 +0.4
519,021 - Dshi_0534 0.11 +0.3

Or see this region's nucleotide sequence