Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1106

Experiment: BG11 with nitrate 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with nitrate 50 mM
1,123,600	+				-0.4
1,123,613	-				+0.0
1,123,652	-				+0.8
1,123,676	+				+0.6
1,123,741	-		Synpcc7942_1106	0.13	+0.4
1,123,888	-		Synpcc7942_1106	0.45	+1.9
1,123,891	+		Synpcc7942_1106	0.45	+2.7
1,123,893	+		Synpcc7942_1106	0.46	+2.0
1,123,949	-		Synpcc7942_1106	0.58	+2.5
1,123,958	-		Synpcc7942_1106	0.59	-1.2
1,124,015	+		Synpcc7942_1106	0.72	+1.6
1,124,040	+		Synpcc7942_1106	0.77	+1.7
1,124,040	+		Synpcc7942_1106	0.77	+0.3
1,124,045	+		Synpcc7942_1106	0.78	+1.7
1,124,047	+		Synpcc7942_1106	0.78	+1.6
1,124,048	-		Synpcc7942_1106	0.79	+1.7
1,124,048	-		Synpcc7942_1106	0.79	+2.2
1,124,053	-		Synpcc7942_1106	0.80	+1.5
1,124,058	-		Synpcc7942_1106	0.81	+2.2
1,124,065	+		Synpcc7942_1106	0.82	+1.8
1,124,084	+		Synpcc7942_1106	0.86	+0.5
1,124,088	+		Synpcc7942_1106	0.87	+2.2
1,124,093	+		Synpcc7942_1106	0.88	+1.7
1,124,093	+		Synpcc7942_1106	0.88	+1.8
1,124,093	+		Synpcc7942_1106	0.88	+2.6
1,124,093	+		Synpcc7942_1106	0.88	+1.9
1,124,096	-		Synpcc7942_1106	0.89	+1.2
1,124,096	-		Synpcc7942_1106	0.89	+0.5
1,124,100	+		Synpcc7942_1106	0.90	+1.8
1,124,101	-		Synpcc7942_1106	0.90	+1.8
1,124,101	-		Synpcc7942_1106	0.90	+2.4
1,124,141	+				+1.1
1,124,146	+				+0.9
1,124,164	-				+1.4
1,124,182	-				-0.2
1,124,182	-				+1.2
1,124,182	-				+0.6
1,124,196	-				-2.9
1,124,204	+				-0.2
1,124,214	+				-0.7
1,124,214	+				+0.6
1,124,214	+				-0.5
1,124,217	-				-0.4
1,124,222	-				+0.8
1,124,225	+				-1.7
1,124,233	-				-0.4
1,124,243	+				-0.5
1,124,308	+				+0.5
1,124,313	+				+0.2
1,124,313	+				+1.2
1,124,314	-				+2.2
1,124,321	+				+1.0
1,124,321	-				+2.2
1,124,322	+				+1.9
1,124,330	-				+2.8
1,124,330	-				+0.5
1,124,346	+				+1.0
1,124,360	-				+1.6
1,124,366	-				+1.5
1,124,400	-		Synpcc7942_1107	0.14	+1.8
1,124,432	+		Synpcc7942_1107	0.18	+1.8
1,124,433	-		Synpcc7942_1107	0.18	+2.9
1,124,453	-		Synpcc7942_1107	0.20	+2.6
1,124,470	+		Synpcc7942_1107	0.23	+0.1
1,124,478	-		Synpcc7942_1107	0.24	+1.4
1,124,478	-		Synpcc7942_1107	0.24	+1.3
1,124,498	-		Synpcc7942_1107	0.26	+2.4
1,124,499	-		Synpcc7942_1107	0.26	+2.3
1,124,503	+		Synpcc7942_1107	0.27	+2.7
1,124,503	+		Synpcc7942_1107	0.27	+0.3
1,124,511	-		Synpcc7942_1107	0.28	+1.6
1,124,513	+		Synpcc7942_1107	0.28	+1.1
1,124,521	-		Synpcc7942_1107	0.29	+2.3
1,124,523	+		Synpcc7942_1107	0.29	+0.3
1,124,523	+		Synpcc7942_1107	0.29	+2.5
1,124,523	+		Synpcc7942_1107	0.29	+1.7
1,124,523	+		Synpcc7942_1107	0.29	+1.8
1,124,523	+		Synpcc7942_1107	0.29	-1.1
1,124,531	-		Synpcc7942_1107	0.30	+1.4
1,124,531	-		Synpcc7942_1107	0.30	+1.3
1,124,531	-		Synpcc7942_1107	0.30	+3.0
1,124,550	+		Synpcc7942_1107	0.33	+1.6
1,124,550	+		Synpcc7942_1107	0.33	+1.2
1,124,563	-		Synpcc7942_1107	0.34	+2.7
1,124,567	-		Synpcc7942_1107	0.35	+2.1
1,124,580	+		Synpcc7942_1107	0.36	+2.3
1,124,580	+		Synpcc7942_1107	0.36	+1.8
1,124,626	-		Synpcc7942_1107	0.42	+0.4
1,124,646	+		Synpcc7942_1107	0.45	+1.2
1,124,653	+		Synpcc7942_1107	0.45	+1.3
1,124,661	-		Synpcc7942_1107	0.46	-0.0
1,124,661	-		Synpcc7942_1107	0.46	+2.7
1,124,661	-		Synpcc7942_1107	0.46	+1.3
1,124,661	-		Synpcc7942_1107	0.46	+1.5
1,124,661	-		Synpcc7942_1107	0.46	+0.1
1,124,680	+		Synpcc7942_1107	0.49	+1.3
1,124,688	-		Synpcc7942_1107	0.50	+2.1
1,124,691	+		Synpcc7942_1107	0.50	+2.0
1,124,693	-		Synpcc7942_1107	0.50	+2.9
1,124,701	+		Synpcc7942_1107	0.51	+1.7
1,124,701	+		Synpcc7942_1107	0.51	+1.3
1,124,701	+		Synpcc7942_1107	0.51	+2.3
1,124,707	+		Synpcc7942_1107	0.52	+1.5
1,124,709	-		Synpcc7942_1107	0.52	+0.5
1,124,709	-		Synpcc7942_1107	0.52	+0.5
1,124,709	-		Synpcc7942_1107	0.52	+0.4
1,124,709	-		Synpcc7942_1107	0.52	-1.6
1,124,709	-		Synpcc7942_1107	0.52	+0.1
1,124,720	-		Synpcc7942_1107	0.54	+1.8
1,124,738	+		Synpcc7942_1107	0.56	+2.1
1,124,753	+		Synpcc7942_1107	0.58	+1.2
1,124,768	+		Synpcc7942_1107	0.60	+1.7
1,124,776	+		Synpcc7942_1107	0.61	+2.9
1,124,776	-		Synpcc7942_1107	0.61	+1.2
1,124,786	-		Synpcc7942_1107	0.62	+1.0
1,124,791	-		Synpcc7942_1107	0.63	+2.0
1,124,812	+		Synpcc7942_1107	0.65	+2.8
1,124,813	+		Synpcc7942_1107	0.65	+1.3
1,124,820	-		Synpcc7942_1107	0.66	+2.5
1,124,821	-		Synpcc7942_1107	0.66	+0.5
1,124,821	-		Synpcc7942_1107	0.66	+1.1
1,124,823	+		Synpcc7942_1107	0.67	+1.5
1,124,866	-		Synpcc7942_1107	0.72	+2.0
1,124,866	-		Synpcc7942_1107	0.72	+1.2
1,124,873	+		Synpcc7942_1107	0.73	+1.4
1,124,873	+		Synpcc7942_1107	0.73	+1.8
1,124,873	+		Synpcc7942_1107	0.73	+0.9
1,124,881	-		Synpcc7942_1107	0.74	+1.7
1,124,881	-		Synpcc7942_1107	0.74	+1.8
1,124,881	-		Synpcc7942_1107	0.74	+1.8
1,124,891	-		Synpcc7942_1107	0.75	+2.1
1,124,891	-		Synpcc7942_1107	0.75	+1.8
1,124,896	-		Synpcc7942_1107	0.76	+0.8
1,124,926	+		Synpcc7942_1107	0.80	+3.7
1,124,937	+		Synpcc7942_1107	0.81	+2.6
1,124,937	+		Synpcc7942_1107	0.81	+2.8
1,124,937	+		Synpcc7942_1107	0.81	+1.8
1,124,942	+		Synpcc7942_1107	0.82	+1.6
1,124,945	-		Synpcc7942_1107	0.82	+1.5
1,124,948	+		Synpcc7942_1107	0.82	+1.0
1,124,950	-		Synpcc7942_1107	0.83	+0.6
1,124,951	-		Synpcc7942_1107	0.83	-0.5
1,124,956	-		Synpcc7942_1107	0.83	+2.8
1,124,963	-		Synpcc7942_1107	0.84	+2.0
1,124,978	-		Synpcc7942_1107	0.86	+2.1
1,124,980	-		Synpcc7942_1107	0.86	+0.1
1,124,986	+		Synpcc7942_1107	0.87	+1.5
1,125,000	+		Synpcc7942_1107	0.89	+1.8
1,125,000	+		Synpcc7942_1107	0.89	+1.3
1,125,036	+				+1.4
1,125,051	+				+2.0
1,125,079	+				-0.8
1,125,079	+				+0.3
1,125,080	-				+0.0
1,125,080	-				-2.3
1,125,087	-				+0.3
1,125,125	+				-1.5