Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5530

Experiment: Nitrate reduction, replicate B t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5529 and Pf1N1B4_5530 are separated by 161 nucleotidesPf1N1B4_5530 and Pf1N1B4_5531 are separated by 79 nucleotides Pf1N1B4_5529 - hypothetical protein, at 288,321 to 289,550 _5529 Pf1N1B4_5530 - hypothetical protein, at 289,712 to 290,338 _5530 Pf1N1B4_5531 - hypothetical protein, at 290,418 to 290,804 _5531 Position (kb) 289 290 291Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 288.764 kb on + strand, within Pf1N1B4_5529at 288.765 kb on - strand, within Pf1N1B4_5529at 288.765 kb on - strand, within Pf1N1B4_5529at 288.839 kb on + strand, within Pf1N1B4_5529at 288.839 kb on + strand, within Pf1N1B4_5529at 288.840 kb on - strand, within Pf1N1B4_5529at 288.840 kb on - strand, within Pf1N1B4_5529at 288.840 kb on - strand, within Pf1N1B4_5529at 288.871 kb on + strand, within Pf1N1B4_5529at 289.052 kb on - strand, within Pf1N1B4_5529at 289.180 kb on + strand, within Pf1N1B4_5529at 289.180 kb on + strand, within Pf1N1B4_5529at 289.181 kb on - strand, within Pf1N1B4_5529at 289.181 kb on - strand, within Pf1N1B4_5529at 289.201 kb on + strand, within Pf1N1B4_5529at 289.201 kb on + strand, within Pf1N1B4_5529at 289.201 kb on + strand, within Pf1N1B4_5529at 289.201 kb on + strand, within Pf1N1B4_5529at 289.202 kb on - strand, within Pf1N1B4_5529at 289.202 kb on - strand, within Pf1N1B4_5529at 289.202 kb on - strand, within Pf1N1B4_5529at 289.202 kb on - strand, within Pf1N1B4_5529at 289.366 kb on + strand, within Pf1N1B4_5529at 289.366 kb on + strand, within Pf1N1B4_5529at 289.366 kb on + strand, within Pf1N1B4_5529at 289.367 kb on - strand, within Pf1N1B4_5529at 289.495 kb on + strandat 289.495 kb on + strandat 289.495 kb on + strandat 289.495 kb on + strandat 289.495 kb on + strandat 289.496 kb on - strandat 289.496 kb on - strandat 289.496 kb on - strandat 289.496 kb on - strandat 289.511 kb on + strandat 289.544 kb on + strandat 289.545 kb on - strandat 289.594 kb on + strandat 289.594 kb on + strandat 289.731 kb on + strandat 289.732 kb on - strandat 289.810 kb on - strand, within Pf1N1B4_5530at 289.992 kb on + strand, within Pf1N1B4_5530at 289.992 kb on + strand, within Pf1N1B4_5530at 289.992 kb on + strandat 289.992 kb on + strand, within Pf1N1B4_5530at 289.992 kb on + strand, within Pf1N1B4_5530at 289.993 kb on - strand, within Pf1N1B4_5530at 289.993 kb on - strand, within Pf1N1B4_5530at 290.041 kb on + strand, within Pf1N1B4_5530at 290.041 kb on + strand, within Pf1N1B4_5530at 290.041 kb on + strand, within Pf1N1B4_5530at 290.041 kb on + strand, within Pf1N1B4_5530at 290.041 kb on + strand, within Pf1N1B4_5530at 290.041 kb on + strand, within Pf1N1B4_5530at 290.041 kb on + strandat 290.041 kb on + strand, within Pf1N1B4_5530at 290.042 kb on - strand, within Pf1N1B4_5530at 290.042 kb on - strand, within Pf1N1B4_5530at 290.042 kb on - strandat 290.042 kb on - strand, within Pf1N1B4_5530at 290.042 kb on - strand, within Pf1N1B4_5530at 290.059 kb on + strand, within Pf1N1B4_5530at 290.068 kb on - strand, within Pf1N1B4_5530at 290.095 kb on + strand, within Pf1N1B4_5530at 290.105 kb on + strandat 290.106 kb on - strand, within Pf1N1B4_5530at 290.152 kb on + strand, within Pf1N1B4_5530at 290.153 kb on - strand, within Pf1N1B4_5530at 290.153 kb on - strand, within Pf1N1B4_5530at 290.232 kb on + strand, within Pf1N1B4_5530at 290.232 kb on + strand, within Pf1N1B4_5530at 290.232 kb on + strand, within Pf1N1B4_5530at 290.232 kb on + strand, within Pf1N1B4_5530at 290.232 kb on + strand, within Pf1N1B4_5530at 290.233 kb on - strand, within Pf1N1B4_5530at 290.255 kb on + strand, within Pf1N1B4_5530at 290.275 kb on + strand, within Pf1N1B4_5530at 290.275 kb on + strand, within Pf1N1B4_5530at 290.275 kb on + strand, within Pf1N1B4_5530at 290.276 kb on - strandat 290.276 kb on - strandat 290.276 kb on - strandat 290.276 kb on - strandat 290.306 kb on + strandat 290.306 kb on + strandat 290.306 kb on + strandat 290.306 kb on + strandat 290.306 kb on + strandat 290.307 kb on - strandat 290.307 kb on - strandat 290.307 kb on - strandat 290.307 kb on - strandat 290.408 kb on + strandat 290.419 kb on + strandat 290.419 kb on + strandat 290.419 kb on + strandat 290.419 kb on + strandat 290.419 kb on + strandat 290.419 kb on + strandat 290.419 kb on + strandat 290.420 kb on - strandat 290.420 kb on - strandat 290.420 kb on - strandat 290.420 kb on - strandat 290.420 kb on - strandat 290.420 kb on - strandat 290.493 kb on + strandat 290.493 kb on + strand, within Pf1N1B4_5531at 290.493 kb on + strand, within Pf1N1B4_5531at 290.493 kb on + strand, within Pf1N1B4_5531at 290.494 kb on - strand, within Pf1N1B4_5531at 290.494 kb on - strand, within Pf1N1B4_5531at 290.494 kb on - strand, within Pf1N1B4_5531at 290.494 kb on - strand, within Pf1N1B4_5531at 290.497 kb on + strand, within Pf1N1B4_5531at 290.498 kb on - strand, within Pf1N1B4_5531at 290.498 kb on - strand, within Pf1N1B4_5531at 290.506 kb on + strand, within Pf1N1B4_5531at 290.772 kb on + strandat 290.878 kb on + strandat 290.878 kb on + strandat 290.878 kb on + strandat 290.879 kb on - strandat 290.879 kb on - strandat 290.925 kb on + strandat 291.031 kb on - strandat 291.031 kb on - strandat 291.031 kb on - strandat 291.031 kb on - strandat 291.031 kb on - strandat 291.037 kb on + strandat 291.037 kb on + strandat 291.037 kb on + strandat 291.055 kb on + strandat 291.056 kb on - strandat 291.092 kb on + strandat 291.092 kb on + strandat 291.092 kb on + strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.097 kb on - strandat 291.097 kb on - strandat 291.181 kb on + strandat 291.182 kb on - strandat 291.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B t2
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288,764 + Pf1N1B4_5529 0.36 -0.1
288,765 - Pf1N1B4_5529 0.36 -0.1
288,765 - Pf1N1B4_5529 0.36 -1.3
288,839 + Pf1N1B4_5529 0.42 -0.1
288,839 + Pf1N1B4_5529 0.42 -0.1
288,840 - Pf1N1B4_5529 0.42 -0.1
288,840 - Pf1N1B4_5529 0.42 -0.1
288,840 - Pf1N1B4_5529 0.42 -2.6
288,871 + Pf1N1B4_5529 0.45 -0.1
289,052 - Pf1N1B4_5529 0.59 -0.1
289,180 + Pf1N1B4_5529 0.70 -0.1
289,180 + Pf1N1B4_5529 0.70 -0.1
289,181 - Pf1N1B4_5529 0.70 -1.9
289,181 - Pf1N1B4_5529 0.70 -0.1
289,201 + Pf1N1B4_5529 0.72 -1.5
289,201 + Pf1N1B4_5529 0.72 -0.1
289,201 + Pf1N1B4_5529 0.72 -0.1
289,201 + Pf1N1B4_5529 0.72 -0.1
289,202 - Pf1N1B4_5529 0.72 -0.1
289,202 - Pf1N1B4_5529 0.72 -0.1
289,202 - Pf1N1B4_5529 0.72 -4.0
289,202 - Pf1N1B4_5529 0.72 -0.1
289,366 + Pf1N1B4_5529 0.85 -1.4
289,366 + Pf1N1B4_5529 0.85 -0.1
289,366 + Pf1N1B4_5529 0.85 -2.9
289,367 - Pf1N1B4_5529 0.85 -0.1
289,495 + -0.1
289,495 + -1.0
289,495 + -0.1
289,495 + -0.1
289,495 + -1.1
289,496 - -0.1
289,496 - -2.3
289,496 - -0.1
289,496 - -0.1
289,511 + -0.1
289,544 + -1.3
289,545 - -0.1
289,594 + -1.8
289,594 + -1.2
289,731 + -2.4
289,732 - -2.3
289,810 - Pf1N1B4_5530 0.16 -2.6
289,992 + Pf1N1B4_5530 0.45 -0.1
289,992 + Pf1N1B4_5530 0.45 -0.1
289,992 + -0.1
289,992 + Pf1N1B4_5530 0.45 -0.1
289,992 + Pf1N1B4_5530 0.45 -0.1
289,993 - Pf1N1B4_5530 0.45 -2.0
289,993 - Pf1N1B4_5530 0.45 -0.1
290,041 + Pf1N1B4_5530 0.52 -2.0
290,041 + Pf1N1B4_5530 0.52 -0.1
290,041 + Pf1N1B4_5530 0.52 -0.1
290,041 + Pf1N1B4_5530 0.52 -2.7
290,041 + Pf1N1B4_5530 0.52 -0.1
290,041 + Pf1N1B4_5530 0.52 -2.0
290,041 + -2.0
290,041 + Pf1N1B4_5530 0.52 -0.1
290,042 - Pf1N1B4_5530 0.53 -0.1
290,042 - Pf1N1B4_5530 0.53 -0.1
290,042 - -2.1
290,042 - Pf1N1B4_5530 0.53 -0.1
290,042 - Pf1N1B4_5530 0.53 -0.1
290,059 + Pf1N1B4_5530 0.55 -0.1
290,068 - Pf1N1B4_5530 0.57 -1.7
290,095 + Pf1N1B4_5530 0.61 -1.6
290,105 + -0.1
290,106 - Pf1N1B4_5530 0.63 -0.1
290,152 + Pf1N1B4_5530 0.70 -0.1
290,153 - Pf1N1B4_5530 0.70 -3.7
290,153 - Pf1N1B4_5530 0.70 -2.5
290,232 + Pf1N1B4_5530 0.83 -0.1
290,232 + Pf1N1B4_5530 0.83 -0.1
290,232 + Pf1N1B4_5530 0.83 -1.5
290,232 + Pf1N1B4_5530 0.83 -0.1
290,232 + Pf1N1B4_5530 0.83 -1.5
290,233 - Pf1N1B4_5530 0.83 -0.1
290,255 + Pf1N1B4_5530 0.87 -0.1
290,275 + Pf1N1B4_5530 0.90 -1.7
290,275 + Pf1N1B4_5530 0.90 -0.1
290,275 + Pf1N1B4_5530 0.90 -1.4
290,276 - -0.1
290,276 - -0.1
290,276 - -2.0
290,276 - -1.5
290,306 + -0.1
290,306 + -0.1
290,306 + -0.1
290,306 + -0.1
290,306 + -3.3
290,307 - -2.1
290,307 - -0.1
290,307 - -2.0
290,307 - -0.1
290,408 + -2.7
290,419 + -2.1
290,419 + -1.3
290,419 + -1.6
290,419 + -3.2
290,419 + -2.4
290,419 + -0.1
290,419 + -0.1
290,420 - -0.4
290,420 - -0.1
290,420 - -0.1
290,420 - -0.1
290,420 - -0.5
290,420 - -1.9
290,493 + -2.3
290,493 + Pf1N1B4_5531 0.19 -0.1
290,493 + Pf1N1B4_5531 0.19 -0.1
290,493 + Pf1N1B4_5531 0.19 -0.1
290,494 - Pf1N1B4_5531 0.20 -1.8
290,494 - Pf1N1B4_5531 0.20 -0.1
290,494 - Pf1N1B4_5531 0.20 -0.1
290,494 - Pf1N1B4_5531 0.20 -0.1
290,497 + Pf1N1B4_5531 0.20 -0.1
290,498 - Pf1N1B4_5531 0.21 -2.1
290,498 - Pf1N1B4_5531 0.21 -1.2
290,506 + Pf1N1B4_5531 0.23 -0.1
290,772 + -1.6
290,878 + -1.2
290,878 + -0.1
290,878 + -0.1
290,879 - -0.1
290,879 - -0.1
290,925 + -2.0
291,031 - -1.4
291,031 - -2.8
291,031 - -0.1
291,031 - -1.5
291,031 - -0.1
291,037 + -2.2
291,037 + -0.1
291,037 + -0.1
291,055 + -0.1
291,056 - -0.1
291,092 + -0.1
291,092 + +0.9
291,092 + -0.1
291,093 - -1.1
291,093 - -0.1
291,093 - -0.1
291,093 - -0.1
291,093 - -0.1
291,093 - -0.1
291,093 - -1.8
291,097 - -0.1
291,097 - -0.1
291,181 + -0.1
291,182 - -0.1
291,182 - -0.1

Or see this region's nucleotide sequence