Experiment: Nitrate reduction, replicate B t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4832 and Pf1N1B4_4833 are separated by 7 nucleotides Pf1N1B4_4833 and Pf1N1B4_4834 are separated by 33 nucleotides Pf1N1B4_4834 and Pf1N1B4_4835 are separated by 387 nucleotides
Pf1N1B4_4832 - hypothetical protein, at 5,337,458 to 5,337,664
_4832
Pf1N1B4_4833 - DNA-binding response regulator, LuxR family, at 5,337,672 to 5,338,304
_4833
Pf1N1B4_4834 - Sensor histidine kinase, at 5,338,338 to 5,339,699
_4834
Pf1N1B4_4835 - Carbon starvation protein A, at 5,340,087 to 5,342,144
_4835
Position (kb) 5338
5339
5340 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5337.382 kb on + strand at 5337.497 kb on + strand, within Pf1N1B4_4832 at 5337.497 kb on + strand, within Pf1N1B4_4832 at 5337.498 kb on - strand, within Pf1N1B4_4832 at 5337.498 kb on - strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.502 kb on - strand, within Pf1N1B4_4832 at 5337.502 kb on - strand, within Pf1N1B4_4832 at 5337.502 kb on - strand, within Pf1N1B4_4832 at 5337.505 kb on + strand, within Pf1N1B4_4832 at 5337.508 kb on + strand, within Pf1N1B4_4832 at 5337.508 kb on + strand, within Pf1N1B4_4832 at 5337.532 kb on + strand at 5337.625 kb on + strand, within Pf1N1B4_4832 at 5337.768 kb on + strand at 5337.916 kb on + strand, within Pf1N1B4_4833 at 5337.916 kb on + strand, within Pf1N1B4_4833 at 5337.988 kb on + strand, within Pf1N1B4_4833 at 5338.025 kb on - strand, within Pf1N1B4_4833 at 5338.030 kb on + strand, within Pf1N1B4_4833 at 5338.030 kb on + strand, within Pf1N1B4_4833 at 5338.831 kb on - strand, within Pf1N1B4_4834 at 5339.164 kb on + strand, within Pf1N1B4_4834 at 5339.164 kb on + strand, within Pf1N1B4_4834 at 5339.164 kb on + strand, within Pf1N1B4_4834 at 5339.212 kb on + strand, within Pf1N1B4_4834 at 5339.213 kb on - strand, within Pf1N1B4_4834 at 5339.213 kb on - strand, within Pf1N1B4_4834 at 5339.213 kb on - strand, within Pf1N1B4_4834 at 5339.213 kb on - strand at 5339.213 kb on - strand, within Pf1N1B4_4834 at 5339.347 kb on + strand, within Pf1N1B4_4834 at 5339.348 kb on - strand, within Pf1N1B4_4834 at 5339.348 kb on - strand, within Pf1N1B4_4834 at 5339.404 kb on + strand, within Pf1N1B4_4834 at 5339.416 kb on + strand, within Pf1N1B4_4834 at 5339.497 kb on + strand, within Pf1N1B4_4834 at 5339.498 kb on - strand, within Pf1N1B4_4834 at 5339.534 kb on - strand, within Pf1N1B4_4834 at 5339.744 kb on + strand at 5339.744 kb on + strand at 5339.744 kb on + strand at 5339.745 kb on - strand at 5339.755 kb on + strand at 5339.875 kb on + strand at 5339.947 kb on + strand at 5339.948 kb on - strand at 5339.948 kb on - strand at 5339.948 kb on - strand at 5339.948 kb on - strand at 5339.953 kb on + strand at 5339.954 kb on - strand at 5339.957 kb on + strand at 5339.968 kb on + strand at 5339.969 kb on - strand at 5339.972 kb on + strand at 5339.973 kb on - strand at 5339.987 kb on - strand at 5340.041 kb on - strand at 5340.041 kb on - strand at 5340.041 kb on - strand at 5340.041 kb on - strand at 5340.041 kb on - strand at 5340.043 kb on - strand at 5340.045 kb on + strand at 5340.046 kb on - strand at 5340.219 kb on + strand at 5340.219 kb on + strand at 5340.220 kb on - strand at 5340.220 kb on - strand at 5340.220 kb on - strand at 5340.220 kb on - strand at 5340.238 kb on - strand at 5340.241 kb on - strand at 5340.324 kb on + strand, within Pf1N1B4_4835
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B t2 remove 5,337,382 + +0.0 5,337,497 + Pf1N1B4_4832 0.19 +0.0 5,337,497 + Pf1N1B4_4832 0.19 +0.0 5,337,498 - Pf1N1B4_4832 0.19 +0.0 5,337,498 - Pf1N1B4_4832 0.19 +0.0 5,337,501 + Pf1N1B4_4832 0.21 +0.0 5,337,501 + Pf1N1B4_4832 0.21 -2.5 5,337,501 + Pf1N1B4_4832 0.21 +0.0 5,337,501 + Pf1N1B4_4832 0.21 +0.0 5,337,502 - Pf1N1B4_4832 0.21 +0.0 5,337,502 - Pf1N1B4_4832 0.21 +0.0 5,337,502 - Pf1N1B4_4832 0.21 +0.0 5,337,505 + Pf1N1B4_4832 0.23 -3.1 5,337,508 + Pf1N1B4_4832 0.24 -1.7 5,337,508 + Pf1N1B4_4832 0.24 +0.0 5,337,532 + -2.6 5,337,625 + Pf1N1B4_4832 0.81 +0.0 5,337,768 + +0.0 5,337,916 + Pf1N1B4_4833 0.39 -2.1 5,337,916 + Pf1N1B4_4833 0.39 +0.0 5,337,988 + Pf1N1B4_4833 0.50 -4.3 5,338,025 - Pf1N1B4_4833 0.56 -4.2 5,338,030 + Pf1N1B4_4833 0.57 +0.0 5,338,030 + Pf1N1B4_4833 0.57 +0.0 5,338,831 - Pf1N1B4_4834 0.36 +0.0 5,339,164 + Pf1N1B4_4834 0.61 +0.0 5,339,164 + Pf1N1B4_4834 0.61 -1.2 5,339,164 + Pf1N1B4_4834 0.61 -3.2 5,339,212 + Pf1N1B4_4834 0.64 -5.3 5,339,213 - Pf1N1B4_4834 0.64 +0.0 5,339,213 - Pf1N1B4_4834 0.64 +0.0 5,339,213 - Pf1N1B4_4834 0.64 +0.0 5,339,213 - +0.0 5,339,213 - Pf1N1B4_4834 0.64 -4.5 5,339,347 + Pf1N1B4_4834 0.74 +0.0 5,339,348 - Pf1N1B4_4834 0.74 -4.3 5,339,348 - Pf1N1B4_4834 0.74 -3.9 5,339,404 + Pf1N1B4_4834 0.78 +0.0 5,339,416 + Pf1N1B4_4834 0.79 +0.0 5,339,497 + Pf1N1B4_4834 0.85 -3.6 5,339,498 - Pf1N1B4_4834 0.85 +0.0 5,339,534 - Pf1N1B4_4834 0.88 +0.0 5,339,744 + +0.0 5,339,744 + +0.0 5,339,744 + +0.0 5,339,745 - -0.5 5,339,755 + -3.8 5,339,875 + +0.0 5,339,947 + -2.3 5,339,948 - +0.0 5,339,948 - -1.4 5,339,948 - +0.0 5,339,948 - +0.0 5,339,953 + -3.7 5,339,954 - -3.8 5,339,957 + -2.4 5,339,968 + +0.0 5,339,969 - +0.0 5,339,972 + +0.0 5,339,973 - -4.0 5,339,987 - +0.0 5,340,041 - +0.0 5,340,041 - -4.2 5,340,041 - +0.0 5,340,041 - -3.8 5,340,041 - +0.0 5,340,043 - +0.0 5,340,045 + -3.9 5,340,046 - -1.0 5,340,219 + -4.4 5,340,219 + -3.2 5,340,220 - +0.0 5,340,220 - -4.5 5,340,220 - +0.0 5,340,220 - -4.2 5,340,238 - -2.8 5,340,241 - +0.0 5,340,324 + Pf1N1B4_4835 0.12 -3.3
Or see this region's nucleotide sequence