Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3599

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
4,008,791	-				+0.1
4,008,824	-				+0.1
4,008,825	+				+0.1
4,008,826	-				+0.1
4,008,826	-				+0.1
4,008,826	-				-2.4
4,008,832	+				-2.4
4,008,832	+				+0.1
4,008,833	-				+0.1
4,008,833	-				+0.1
4,008,833	-				+0.1
4,008,851	+				+0.1
4,008,851	+				+0.1
4,008,852	-				-3.9
4,008,852	-				+0.1
4,008,852	-				-3.1
4,008,852	-				+0.1
4,008,870	+				+0.1
4,009,112	-		Pf1N1B4_3597	0.64	+0.1
4,009,118	+		Pf1N1B4_3597	0.66	+0.1
4,009,119	-		Pf1N1B4_3597	0.66	+0.1
4,009,124	+		Pf1N1B4_3597	0.67	+0.1
4,009,124	+		Pf1N1B4_3597	0.67	-3.1
4,009,124	+		Pf1N1B4_3597	0.67	+0.1
4,009,124	+		Pf1N1B4_3597	0.67	+0.1
4,009,124	+		Pf1N1B4_3597	0.67	-2.8
4,009,124	+		Pf1N1B4_3597	0.67	+0.1
4,009,124	+				+0.1
4,009,124	+		Pf1N1B4_3597	0.67	+0.1
4,009,124	+		Pf1N1B4_3597	0.67	-1.6
4,009,124	+		Pf1N1B4_3597	0.67	-2.7
4,009,124	+		Pf1N1B4_3597	0.67	+0.1
4,009,125	-		Pf1N1B4_3597	0.68	-2.7
4,009,125	-		Pf1N1B4_3597	0.68	-3.4
4,009,125	-		Pf1N1B4_3597	0.68	-2.0
4,009,125	-		Pf1N1B4_3597	0.68	+0.1
4,009,125	-		Pf1N1B4_3597	0.68	-2.2
4,009,125	-		Pf1N1B4_3597	0.68	-0.9
4,009,125	-		Pf1N1B4_3597	0.68	-2.5
4,009,125	-		Pf1N1B4_3597	0.68	+0.1
4,009,125	-		Pf1N1B4_3597	0.68	-1.6
4,009,125	-		Pf1N1B4_3597	0.68	-2.2
4,009,125	-		Pf1N1B4_3597	0.68	+0.1
4,009,125	-		Pf1N1B4_3597	0.68	+0.1
4,009,251	-				+0.0
4,009,251	-				-2.7
4,009,273	+				-3.1
4,009,273	+				-2.8
4,009,274	-				-1.4
4,009,274	-				-1.7
4,009,274	-				+0.0
4,009,449	+		Pf1N1B4_3598	0.63	-2.9
4,009,449	+		Pf1N1B4_3598	0.63	-3.1
4,009,450	-		Pf1N1B4_3598	0.63	-2.3
4,009,450	-		Pf1N1B4_3598	0.63	-2.9
4,009,450	-				-1.7
4,009,451	+		Pf1N1B4_3598	0.63	+0.0
4,009,451	+		Pf1N1B4_3598	0.63	+0.0
4,009,451	+		Pf1N1B4_3598	0.63	+0.0
4,009,451	+		Pf1N1B4_3598	0.63	-1.7
4,009,452	-		Pf1N1B4_3598	0.64	-3.6
4,009,561	+				+0.0
4,009,583	+				-2.7
4,009,583	+				+0.0
4,009,583	+				-4.7
4,009,583	+				-0.7
4,009,622	+				+0.0
4,009,622	+				+0.0
4,009,681	+				+0.0
4,009,886	+		Pf1N1B4_3599	0.10	+0.0
4,009,886	+		Pf1N1B4_3599	0.10	-2.1
4,009,887	-		Pf1N1B4_3599	0.11	+0.0
4,009,887	-		Pf1N1B4_3599	0.11	+0.0
4,009,887	-		Pf1N1B4_3599	0.11	-1.8
4,009,887	-		Pf1N1B4_3599	0.11	-2.2
4,009,941	-		Pf1N1B4_3599	0.14	-3.9
4,010,062	+		Pf1N1B4_3599	0.22	+0.0
4,010,113	+		Pf1N1B4_3599	0.26	+0.0
4,010,113	+		Pf1N1B4_3599	0.26	+0.0
4,010,113	+		Pf1N1B4_3599	0.26	+0.0
4,010,113	+		Pf1N1B4_3599	0.26	-4.2
4,010,346	+		Pf1N1B4_3599	0.42	+0.0
4,010,451	+		Pf1N1B4_3599	0.49	-3.5
4,010,641	+		Pf1N1B4_3599	0.62	+0.0
4,010,641	+		Pf1N1B4_3599	0.62	+0.0
4,010,642	-		Pf1N1B4_3599	0.62	-2.8
4,011,163	+				+0.0
4,011,164	-				+0.0
4,011,232	+				+0.0
4,011,233	-				-2.0
4,011,234	+				-2.2
4,011,234	+				+0.0
4,011,234	+				+0.0
4,011,264	+				-1.8
4,011,264	+				+0.0
4,011,264	+				+0.0
4,011,453	+		Pf1N1B4_3600	0.11	-2.2
4,011,629	+		Pf1N1B4_3600	0.25	-2.4
4,011,758	-		Pf1N1B4_3600	0.36	+0.0
4,011,882	-		Pf1N1B4_3600	0.46	-2.1
4,011,936	+		Pf1N1B4_3600	0.50	+0.0
4,011,937	-		Pf1N1B4_3600	0.51	-0.4
4,012,191	-		Pf1N1B4_3600	0.71	-2.8