Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3353

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
3,738,911	+		Pf1N1B4_3351	0.57	-0.0
3,738,912	-		Pf1N1B4_3351	0.57	-1.4
3,738,912	-		Pf1N1B4_3351	0.57	-0.0
3,738,956	+		Pf1N1B4_3351	0.69	-0.0
3,738,956	+		Pf1N1B4_3351	0.69	-0.0
3,738,956	+		Pf1N1B4_3351	0.69	-0.0
3,738,956	+		Pf1N1B4_3351	0.69	-0.7
3,739,045	+				-2.6
3,739,046	-				-1.5
3,739,052	+				-0.6
3,739,052	+				-0.0
3,739,109	+				-0.0
3,739,109	+				-1.8
3,739,109	+				-3.1
3,739,109	+				-0.0
3,739,110	-				-0.0
3,739,110	-				-0.0
3,739,110	-				-0.0
3,739,110	-				-0.0
3,739,113	+				-0.0
3,739,113	+				-0.0
3,739,113	+				-3.2
3,739,114	-				-0.0
3,739,114	-				-1.2
3,739,114	-				-0.0
3,739,114	-				-0.0
3,739,117	+				-0.0
3,739,118	-				-0.3
3,739,118	-				-1.5
3,739,271	+		Pf1N1B4_3352	0.23	-0.0
3,739,271	+		Pf1N1B4_3352	0.23	-0.0
3,739,271	+		Pf1N1B4_3352	0.23	-0.0
3,739,272	-		Pf1N1B4_3352	0.23	-0.0
3,739,337	+		Pf1N1B4_3352	0.37	-0.0
3,739,337	+		Pf1N1B4_3352	0.37	-0.0
3,739,337	+		Pf1N1B4_3352	0.37	-0.0
3,739,337	+				-2.3
3,739,337	+		Pf1N1B4_3352	0.37	-0.0
3,739,338	-		Pf1N1B4_3352	0.37	-0.1
3,739,338	-		Pf1N1B4_3352	0.37	-0.0
3,739,338	-		Pf1N1B4_3352	0.37	-0.0
3,739,361	+		Pf1N1B4_3352	0.42	-2.4
3,739,361	+		Pf1N1B4_3352	0.42	-0.0
3,739,467	-		Pf1N1B4_3352	0.64	-2.9
3,739,601	+				-1.2
3,739,601	+				-0.0
3,739,601	+				-0.0
3,739,601	+				-1.4
3,739,601	+				-0.0
3,739,601	+				+1.0
3,739,601	+				-0.0
3,739,601	+				-0.0
3,739,601	+				-0.5
3,739,601	+				-0.0
3,739,601	+				-2.5
3,739,601	+				-0.0
3,739,601	+				-0.0
3,739,602	-				+1.0
3,739,602	-				-0.0
3,739,602	-				-0.0
3,739,602	-				-0.0
3,739,602	-				-0.0
3,739,602	-				-1.3
3,739,602	-				-1.3
3,739,602	-				-0.0
3,739,620	-				-0.0
3,739,668	+				-3.0
3,739,669	-				-1.8
3,739,671	-				-0.0
3,739,671	-				-0.0
3,739,867	+				-0.0
3,739,868	-				-1.5
3,739,937	+		Pf1N1B4_3353	0.19	-1.7
3,739,937	+		Pf1N1B4_3353	0.19	-0.0
3,739,960	+		Pf1N1B4_3353	0.25	-0.0
3,739,960	+		Pf1N1B4_3353	0.25	-0.0
3,739,960	+		Pf1N1B4_3353	0.25	-0.0
3,739,960	+		Pf1N1B4_3353	0.25	-3.0
3,739,961	-		Pf1N1B4_3353	0.26	-0.0
3,739,974	-		Pf1N1B4_3353	0.29	-0.0
3,740,003	-		Pf1N1B4_3353	0.37	-0.0
3,740,003	-				-0.0
3,740,003	-		Pf1N1B4_3353	0.37	-0.0
3,740,134	+		Pf1N1B4_3353	0.72	-3.5
3,740,135	-				-0.0
3,740,251	+				-0.0
3,740,251	+				-1.8
3,740,252	-				-1.5
3,740,260	+				-0.0
3,740,261	-				-0.0
3,740,270	+				-0.4
3,740,271	-				-1.9
3,740,271	-				-4.3
3,740,271	-				-1.9
3,740,271	-				-2.1
3,740,284	-				-0.0
3,740,300	+				-0.0
3,740,300	+				-1.8
3,740,300	+				-0.0
3,740,300	+				-1.4
3,740,300	+				-1.6
3,740,301	-				-1.9
3,740,301	-				-0.0
3,740,301	-				-1.9
3,740,301	-				-0.0
3,740,301	-				-0.0
3,740,301	-				-0.0
3,740,301	-				-0.0
3,740,301	-				-2.4
3,740,304	+				-0.0
3,740,304	+				-0.0
3,740,304	+				-2.5
3,740,304	+				-0.6
3,740,304	+				-0.0
3,740,304	+				-0.0
3,740,304	+				-0.0
3,740,304	+				-0.0
3,740,305	-				-0.0
3,740,305	-				-0.0
3,740,305	-				-2.3
3,740,305	-				-0.0
3,740,305	-				-1.2
3,740,305	-				-1.0
3,740,305	-				-2.9
3,740,305	-				-1.2
3,740,308	-				-0.0
3,740,446	+				-0.0
3,740,446	+				-2.0
3,740,446	+				-0.0
3,740,446	+				-0.0
3,740,447	-				-0.0
3,740,447	-				-2.7
3,740,447	-				-3.0
3,740,447	-				-2.4
3,740,447	-				-2.8
3,740,447	-				-0.0
3,740,450	+				-0.0
3,740,450	+				-0.0
3,740,450	+				-0.0
3,740,450	+				-0.5
3,740,450	+				-1.7
3,740,451	-				-0.0
3,740,451	-				-0.0
3,740,451	-				-0.0
3,740,451	-				-1.6
3,740,451	-				-0.0
3,740,451	-				-0.0
3,740,451	-				-0.0
3,740,451	-				-0.0
3,740,451	-				-0.0
3,740,671	-		Pf1N1B4_3354	0.29	-1.8
3,740,671	-				-0.0
3,740,783	-		Pf1N1B4_3354	0.45	-4.7
3,740,783	-		Pf1N1B4_3354	0.45	-1.6
3,741,088	-		Pf1N1B4_3354	0.90	-1.5
3,741,184	+				-2.4
3,741,184	+				-0.5
3,741,185	-				-0.0
3,741,185	-				-2.6